high performance computing on graphics processing units: hgpu.org

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Acceleration of Linear Finite-Difference Poisson-Boltzmann Methods on Graphics Processing Units

Ruxi Qi, Wesley M. Botello-Smith, Ray Luo

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Tags: Biomolecules, Biophysics, Boltzmann equation, Computational Physics, CUBLAS, CUDA, Electrostatics, Molecular simulation, nVidia, nVidia GeForce GTX 980 Ti, Physics, Poisson Boltzmann

April 11, 2017 by hgpu

Parallelized Vlasov-Fokker-Planck solver for desktop personal computers

Patrik Schonfeldt, Miriam Brosi, Markus Schwarz, Johannes L. Steinmann, Anke-Susanne Muller

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Tags: AMD Radeon R9 290, ATI, OpenCL, Package, Physics

March 28, 2017 by hgpu

GPU accelerated population annealing algorithm

Lev Yu. Barash, Martin Weigel, Michal Borovsky, Wolfhard Janke, Lev N. Shchur

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Tags: Algorithms, CUDA, Ising model, Monte Carlo simulation, nVidia, Package, Physics, Tesla K80

March 14, 2017 by hgpu

Model-independent partial wave analysis using a massively-parallel fitting framework

Liang Sun, Rafael Aoude, Alberto Correa Dos Reis, Michael David Sokoloff

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Tags: Algorithms, CUDA, High Energy Physics - Experiment, nVidia, OpenMP, Package, Physics, Tesla K40

March 14, 2017 by hgpu

Key Reconciliation with Low-Density Parity-Check Codes for Long-Distance Quantum Cryptography

Mario Milicevic, Chen Feng, Lei M. Zhang, P. Glenn Gulak

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Tags: CUDA, nVidia, nVidia GeForce GTX 1080, Parity-check codes, Physics, Quantum Physics, Security

February 28, 2017 by hgpu

MCBooster: a library for fast Monte Carlo generation of phase-space decays on massively parallel platforms

A. A. Alves Jr, M. D. Sokoloff

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Tags: Computational Physics, CUDA, High Energy Physics - Experiment, High Energy Physics - Phenomenology, Intel Xeon Phi, Monte Carlo simulation, nVidia, nVidia GeForce GTX 970, nVidia GeForce GTX Titan Z, nVidia Quadro K 2200, OpenMP, Package, Physics, Tesla K40

February 22, 2017 by hgpu

cellGPU: massively parallel simulations of dynamic vertex models

Daniel M. Sussman

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Tags: Biological Physics, CUDA, nVidia, Package, Physics, Tesla K40

February 14, 2017 by hgpu

Machines and Algorithms

Peter A Boyle

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Tags: Algorithms, Computational Physics, CUDA, HEP, High Energy Physics - Lattice, Intel Xeon Phi, nVidia, Physics, QCD, Review

February 7, 2017 by hgpu

Recurrent Neural Networks for anomaly detection in the Post-Mortem time series of LHC superconducting magnets

Maciej Wielgosz, Andrzej Skoczen, Matej Mertik

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Tags: CUDA, Deep learning, Instrumentation and Detectors, Keras, LSTM, Machine learning, Neural networks, nVidia, Physics, RNN, Tesla K80, Theano

February 7, 2017 by hgpu

GraviDy: a GPU modular, parallel N-body integrator

Cristian Maureira-Fredes, Pau Amaro-Seoane

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Tags: Astrophysics, CUDA, Globular clusters, Gravitation, Instrumentation and Methods for Astrophysics, MPI, nVidia, OpenMP, Package, Physics, Tesla C2050, Tesla C2070, Tesla M2050

February 5, 2017 by hgpu

An FPGA Accelerator for Molecular Dynamics Simulation Using OpenCL

Hasitha Muthumala Waidyasooriya, Masanori Hariyama, Kota Kasahara

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Tags: Chemistry, FPGA, Heterogeneous systems, Molecular dynamics, OpenCL, Performance, Physics

January 10, 2017 by hgpu

Deep Neural Networks to Enable Real-time Multimessenger Astrophysics

Daniel George, E. A. Huerta

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Tags: Algorithms, Artificial intelligence, Astrophysics, CUDA, Deep learning, Filtering, Gravitation, Gravitational waves, Machine learning, Neural networks, nVidia, nVidia GeForce GTX 1080, Physics, Signal processing, Tesla K40, Tesla P100

January 4, 2017 by hgpu

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

Advances in Semantic Patching for HPC-oriented Refactorings with Coccinelle

DuoReduce: MLIR's benchmark

Hardware-Assisted Software Testing and Debugging for Heterogeneous Computing

Shamrock: Multi-GPU hydrodynamics for astrophysics

The Shamrock code: I- Smoothed Particle Hydrodynamics on GPUs

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

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high performance computing on graphics processing units: hgpu.org

Acceleration of Linear Finite-Difference Poisson-Boltzmann Methods on Graphics Processing Units

Parallelized Vlasov-Fokker-Planck solver for desktop personal computers

GPU accelerated population annealing algorithm

Model-independent partial wave analysis using a massively-parallel fitting framework

Key Reconciliation with Low-Density Parity-Check Codes for Long-Distance Quantum Cryptography

MCBooster: a library for fast Monte Carlo generation of phase-space decays on massively parallel platforms

cellGPU: massively parallel simulations of dynamic vertex models

Machines and Algorithms

Recurrent Neural Networks for anomaly detection in the Post-Mortem time series of LHC superconducting magnets

GraviDy: a GPU modular, parallel N-body integrator

An FPGA Accelerator for Molecular Dynamics Simulation Using OpenCL

Deep Neural Networks to Enable Real-time Multimessenger Astrophysics

Recent source codes

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

DuoReduce: MLIR's benchmark

Shamrock: Multi-GPU hydrodynamics for astrophysics

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

Celerity Runtime: High-level C++ for Accelerator Clusters

wgpy: WebGL accelerated numpy-compatible array library for web browser

Microbenchmarking OpenMP target offload with Catch2

SUperman: Highly Efficient Permanent Computation Library

TransCL: An Automatic CUDA-to-OpenCL Programs Transformation Framework

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