high performance computing on graphics processing units: hgpu.org

The use of cone beam computed tomography (CBCT) is growing in the clinical arena due to its ability to provide 3D information during interventions, its high diagnostic quality (sub-millimeter resolution), and its short scanning times (60 s). In many situations, the short scanning time of CBCT is followed by a time-consuming 3D reconstruction. The standard […]

Accurate sound rendering can add significant realism to complement visual display in interactive applications, as well as facilitate acoustic predictions for many engineering applications, like accurate acoustic analysis for architectural design. Numerical simulation can provide this realism most naturally by modeling the underlying physics of wave propagation. However, wave simulation has traditionally posed a tough […]

In this paper, we present a new computationally efficient numerical scheme for the minimizing flow approach for optimal mass transport (OMT) with applications to non-rigid 3D image registration. The approach utilizes all of the gray-scale data in both images, and the optimal mapping from image A to image B is the inverse of the optimal […]

This paper describes vCUDA, a GPGPU (General Purpose Graphics Processing Unit) computing solution for virtual machines. vCUDA allows applications executing within virtual machines (VMs) to leverage hardware acceleration, which can be beneficial to the performance of a class of high performance computing (HPC) applications. The key idea in our design is: API call interception and […]

In this paper, we address the challenging task of finding the best alignment between two 3D objects by solving a global optimization problem in the space of rotations SO(3). The objective function to be optimized is a newly developed rotation-variant similarity measure, which is obtained directly from the object’s geometry and is entirely implemented on […]

We describe heterogeneous multi-CPU and multi-GPU implementations of Jacobi’s iterative method for the 2-D Poisson equation on a structured grid, in both single- and double-precision. Properly tuned, our best implementation achieves 98% of the empirical streaming GPU bandwidth (66% of peak) on a NVIDIA C1060, and 78% on a C870. Motivated to find a still […]

Most real-life optimization problems or decision-making problems are multi-objective in nature, since they normally have several (possibly conflicting) objectives that must be satisfied at the same time. Multi-Objective Evolutionary Algorithms (MOEAs) have been gaining increasing attention among researchers and practitioners. However, they may execute for a long time for some difficult problems, because several evaluations […]

The graphics processing unit (GPU) is used to solve large linear systems derived from partial differential equations. The differential equations studied are strongly convection-dominated, of various sizes, and common to many fields, including computational fluid dynamics, heat transfer, and structural mechanics. The paper presents comparisons between GPU and CPU implementations of several well-known iterative methods, […]

Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are significantly shorter and more error-prone compared to the traditional Sanger shotgun sequencing method. This poses challenges for de novo DNA fragment assembly algorithms in terms of both accuracy (to deal with […]

Reflection ultrasound (US) has been utilized as an adjunct imaging modality for over 30 years. TechniScan, Inc. has developed unique, transmission and concomitant reflection algorithms which are used to reconstruct images from data gathered during a tomographic breast scanning process called Warm Bath Ultrasound (WBU). The transmission algorithm yields high resolution, 3D, attenuation and speed […]

Convolutional neural networks (CNN) applications range from recognition and reasoning (such as handwriting recognition, facial expression recognition and video surveillance) to intelligent text applications such as semantic text analysis and natural language processing applications. Two key observations drive the design of a new architecture for CNN. First, CNN workloads exhibit a widely varying mix of […]

Anatomical and functional information of cardiac vasculature is a key component in the field of interventional cardiology. With the technology of C-arm CT it is possible to reconstruct static intraprocedural 3-D images from angiographic projection data. Current approaches attempt to add the temporal dimension (4-D). In the assumption of periodic heart motion, ECG-gating techniques can […]