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Expressed Sequence Tag Clustering using Commercial Gaming Hardware

Charl van Deventer, Willem A. Clarke, Scott Hazelhurst

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Tags: Algorithms, Bioinformatics, Clustering, Computer science, CUDA, nVidia, nVidia GeForce GTX 260, nVidia GeForce GTX 480, Package, Thesis

September 15, 2013 by hgpu

A Novel CPU/GPU Simulation Environment for Large-Scale Biologically-Realistic Neural Modeling

Roger V. Hoang, Devyani Tanna, Laurence C. Jayet Bray, Sergiu M. Dascalu, Frederick C. Harris Jr.

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Tags: Biology, CUDA, Neural networks, Neuroscience, nVidia, nVidia GeForce GTX 460, nVidia GeForce GTX 480, nVidia GeForce GTX 680, Package, Tesla C2050

September 14, 2013 by hgpu

FuzzyGPU: a fuzzy arithmetic library for GPU

David Defour, Manuel Marin

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 680, Package

September 13, 2013 by hgpu

Recent progress and challenges in exploiting graphics processors in computational fluid dynamics

Kyle E Niemeyer, Chih-Jen Sung

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Tags: Algorithms, Computational Physics, CUDA, Fluid dynamics, Lattice Boltzmann model, Navier-Stokes equations, NSEs, nVidia, OpenACC, Package, Review, Tesla C2075

September 13, 2013 by hgpu

The discrete dipole approximation code DDscat.C++: features, limitations and plans

V. Ya. Choliy

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Tags: Astrophysics, CUDA, Fortran, nVidia, nVidia GeForce GTX 260, Package

September 4, 2013 by hgpu

Detecting multiple periodicities in observational data with the multi-frequency periodogram. II. Frequency Decomposer, a parallelized time-series analysis algorithm

Roman V. Baluev

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Tags: Algorithms, Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce GT 210, Package

September 4, 2013 by hgpu

Oncilla: A GAS Runtime for Efficient Resource Allocation and Data Movement in Accelerated Clusters

Jeff Young, Se Hoon Shon, Sudhakar Yalamanchili, Alex Merritt, Karsten Schwan

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Tags: Computer science, CUDA, GPU cluster, Heterogeneous systems, nVidia, Package

September 2, 2013 by hgpu

Computing High Resolution Explicit Corridor Maps using Parallel Technologies

R. Bonfiglioli

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 680, OpenCL, Package, Path problems, Thesis

August 31, 2013 by hgpu

Accelerating Text Mining Workloads in a MapReduce-based Distributed GPU Environment

Peter Wittek, Sandor Daranyi

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Tags: Algorithms, Computer science, CUDA, MapReduce, nVidia, Package, Self-organizing map, Tesla M2050, Text mining

August 31, 2013 by hgpu

The development and expansion of HOOMD-blue through six years of GPU proliferation

Joshua A. Anderson, Sharon C. Glotzer

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Tags: Computational Physics, CUDA, Molecular dynamics, nVidia, nVidia GeForce 9800 GTX, nVidia GeForce GTX 580, nVidia GeForce GTX Titan, Package, Physics, Python, Software Engineering, Tesla S1070

August 27, 2013 by hgpu

Multiple Time Scales Recurrent Neural Network for Complex Action Acquisition

Martin Peniak, Davide Marocco, Jun Taniy, Yuichi Yamashitay, Kerstin Fischerz, Angelo Cangelosi

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Tags: Computer science, CUDA, Neural networks, nVidia, Package

August 27, 2013 by hgpu

GPU-based simulation of the long-range Potts model via parallel tempering

Attila Boer

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Tags: Computational Physics, Condensed matter, CUDA, nVidia, Package, Statistical Mechanics, Tesla C2050

August 27, 2013 by hgpu

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Towards Efficient and Practical GPU Multitasking in the Era of LLM

Bandicoot: C++ library for GPU accelerated linear algebra

Bandicoot: A Templated C++ Library for GPU Linear Algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

The Fused Kernel Library: A C++ API to Develop Highly-Efficient GPU Libraries

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

Block: Balancing Load in LLM Serving with Context, Knowledge and Predictive Scheduling

SIGMo: Scalable Isomorphism Graph Matching on GPUs

SIGMo: High-Throughput Batched Subgraph Isomorphism on GPUs for Molecular Matching

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

DGEMM without FP64 Arithmetic – using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

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high performance computing on graphics processing units: hgpu.org

Expressed Sequence Tag Clustering using Commercial Gaming Hardware

A Novel CPU/GPU Simulation Environment for Large-Scale Biologically-Realistic Neural Modeling

FuzzyGPU: a fuzzy arithmetic library for GPU

Recent progress and challenges in exploiting graphics processors in computational fluid dynamics

The discrete dipole approximation code DDscat.C++: features, limitations and plans

Detecting multiple periodicities in observational data with the multi-frequency periodogram. II. Frequency Decomposer, a parallelized time-series analysis algorithm

Oncilla: A GAS Runtime for Efficient Resource Allocation and Data Movement in Accelerated Clusters

Computing High Resolution Explicit Corridor Maps using Parallel Technologies

Accelerating Text Mining Workloads in a MapReduce-based Distributed GPU Environment

The development and expansion of HOOMD-blue through six years of GPU proliferation

Multiple Time Scales Recurrent Neural Network for Complex Action Acquisition

GPU-based simulation of the long-range Potts model via parallel tempering

Recent source codes

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Bandicoot: C++ library for GPU accelerated linear algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

SIGMo: Scalable Isomorphism Graph Matching on GPUs

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

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