high performance computing on graphics processing units: hgpu.org

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Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

Hyung-Jin Kim, Weonjong Lee

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Monte Carlo simulation, MPI, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 295, nVidia GeForce GTX 480, Physics, QCD, Tesla C2050

November 9, 2010 by hgpu

SU(2) Lattice QCD Simulations on Fermi GPUs

Nuno Cardoso, Pedro Bicudo

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Tags: Computational Physics, CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 295, nVidia GeForce GTX 480, Package, Physics

November 9, 2010 by hgpu

Efficient pseudo-random number generators for biomolecular simulations on graphics processors

A. Zhmurov, K. Rybnikov, Y. Kholodov, V. Barsegov

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Tags: Biological Physics, Chemical Physics, CUDA, nVidia, nVidia GeForce GTX 295, Physics, Pseudo-random number generators

November 9, 2010 by hgpu

Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS

Casey S. Greene, Nicholas A. Sinnott-Armstrong, Daniel S. Himmelstein, Paul J. Park, Jason H. Moore, Brent T. Harris

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Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, nVidia GeForce GTX 295, Package

November 7, 2010 by hgpu

Biomolecular electrostatics simulation with a parallel FMM-based BEM, using up to 512 GPUs

Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, L. A. Barba, Tsuyoshi Hamada

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Tags: Chemistry, CUDA, GPU cluster, Molecular modeling, nVidia, nVidia GeForce GTX 295, Package

November 7, 2010 by hgpu

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Yongchao Liu, Bertil Schmidt, Douglas Maskell

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Smith-Waterman algorithm

November 6, 2010 by hgpu

Automatic fitting of spiking neuron models to electrophysiological recordings

Cyrille Rossant, Dan F. Goodman, Jonathan Platkiewicz, Romain Brette

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Tags: Adaptive threshold, Biology, CUDA, Distributed computing, Neuroscience, nVidia, nVidia GeForce GTX 295, Optimization, Package

November 6, 2010 by hgpu

Magnetohydrodynamics simulations on graphics processing units

Hon-Cheng Wong, Un-Hong Wong, Xueshang Feng, Zesheng Tang

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Tags: Computational Physics, CUDA, Electrodynamics, Magnetohydrodynamics, nVidia, nVidia GeForce GTX 295, Physics

November 6, 2010 by hgpu

GPU-Accelerated Nearest Neighbor Search for 3D Registration

Deyuan Qiu,Stefan May,Andreas Nuchter

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Tags: Computer science, Computer vision, CUDA, Nearest neighbour, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295

November 5, 2010 by hgpu

Lattice SU(2) on GPU’s

Nuno Cardoso, Pedro Bicudo

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Tags: Computational Physics, CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 295, Package, Physics

November 5, 2010 by hgpu

ECM on Graphics Cards

Daniel Bernstein, Tien-Ren Chen, Chen-Mou Cheng, Tanja Lange, Bo-Yin Yang

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Tags: Computer science, CUDA, Edwards curves, Elliptic curves, Elliptic-curve method of factorization, Factorization, Modular arithmetic, nVidia, nVidia GeForce 8800 GTS, nVidia GeForce GTX 260, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Security

November 5, 2010 by hgpu

Treecode and fast multipole method for N-body simulation with CUDA

Rio Yokota, Lorena Barba

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Tags: Computational Physics, CUDA, N-body simulation, nVidia, nVidia GeForce GTX 295, Package, Physics

November 4, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

SU(2) Lattice QCD Simulations on Fermi GPUs

Efficient pseudo-random number generators for biomolecular simulations on graphics processors

Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS

Biomolecular electrostatics simulation with a parallel FMM-based BEM, using up to 512 GPUs

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Automatic fitting of spiking neuron models to electrophysiological recordings

Magnetohydrodynamics simulations on graphics processing units

GPU-Accelerated Nearest Neighbor Search for 3D Registration

Lattice SU(2) on GPU’s

ECM on Graphics Cards

Treecode and fast multipole method for N-body simulation with CUDA

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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