high performance computing on graphics processing units: hgpu.org

Mark S. Friedrichs, Peter Eastman, Vishal Vaidyanathan, Mike Houston, Scott Legrand, Adam L. Beberg, Daniel L. Ensign, Christopher M. Bruns, Vijay S. Pande

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Tags: ATI, ATI Radeon HD 4870, ATI Stream, Biology, Brook, Chemistry, Computational chemistry, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package, Solvent effects

October 30, 2010 by hgpu

CUSA and CUDE: GPU-accelerated methods for estimating solvent accessible surface area and desolvation

David Dynerman, Erick Butzlaff, Julie C. Mitchell

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Tags: Bioinformatics, Biology, Biophysics, Chemistry, Computational biology, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Solvent effects

October 29, 2010 by hgpu

GpuCV: A GPU-Accelerated Framework for Image Processing and Computer Vision

Yannick Allusse, Patrick Horain, Ankit Agarwal, Cindula Saipriyadarshan

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Tags: Computer science, Computer vision, CUDA, GLSL, Image processing, nVidia, nVidia GeForce GTX 280, OpenGL, Package

October 28, 2010 by hgpu

Implementing Decision Trees and Forests on a GPU

Toby Sharp

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Tags: Computer science, Computer vision, HLSL, nVidia, nVidia GeForce GTX 280

October 28, 2010 by hgpu

An integrated GPU power and performance model

Sunpyo Hong, Hyesoon Kim

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Tags: Analytical model, Computer science, CUDA, Energy-efficient computing, nVidia, nVidia GeForce GTX 280, Performance

October 28, 2010 by hgpu

Fast and scalable list ranking on the GPU

M. Suhail Rehman, Kishore Kothapalli, P. J. Narayanan

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Tags: Algorithms, Computer science, CUDA, List ranking, nVidia, nVidia GeForce GTX 280

October 27, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Optimal loop unrolling for GPGPU programs (thesis)

Optimal loop unrolling for GPGPU programs

Multilevel summation of electrostatic potentials using graphics processing units

Parallel external sorting for CUDA-enabled GPUs with load balancing and low transfer overhead

Improving Performance of Matrix Multiplication and FFT on GPU

Graphics Processing Units and High-Dimensional Optimization

Accelerating molecular dynamic simulation on graphics processing units

CUSA and CUDE: GPU-accelerated methods for estimating solvent accessible surface area and desolvation

GpuCV: A GPU-Accelerated Framework for Image Processing and Computer Vision

Implementing Decision Trees and Forests on a GPU

An integrated GPU power and performance model

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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