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Speeding up subset seed algorithm for intensive protein sequence comparison

Van Hoa Nguyen, Dominique Lavenier

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Sequence alignment

January 4, 2011 by hgpu

Fast GPU-based space-time correlation for activity recognition in video sequences

Mahsan Rofouei, Maryam Moazeni, Majid Sarrafzadeh

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Tags: Computer vision, CUDA, Image processing, nVidia, nVidia Quadro FX 5600

January 4, 2011 by hgpu

Local Search Algorithms on Graphics Processing Units. A Case Study: The Permutation Perceptron Problem

The Van Luong, Nouredine Melab, El-Ghazali Talbi

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8600 M GT, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, Search

January 4, 2011 by hgpu

Efficient Multiplication of Polynomials on Graphics Hardware

Pavel Emeliyanenko

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Tags: Computer science, CUDA, Linear Algebra, nVidia

January 4, 2011 by hgpu

GPU-Based Conjugate Gradient Solver for Lattice QCD with Domain-Wall Fermions

Ting-Wai Chiu, Tung-Han Hsieh, Yao-Yuan Mao, Kenji Ogawa

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Tags: Conjugate gradient solver, CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Physics, QCD

January 4, 2011 by hgpu

Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors

Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Michela Taufer

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Tags: Biology, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce 9800 GX2, nVidia GeForce GTX 280, nVidia Quadro FX 5600

January 3, 2011 by hgpu

Wave field synthesis for 3D audio: architectural prospectives

Dimitris Theodoropoulos, Catalin Bogdan Ciobanu, Georgi Kuzmanov

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Tags: CUDA, FPGA, nVidia, nVidia GeForce 8600 GT, Signal processing

January 3, 2011 by hgpu

Achieving O(1) IP lookup on GPU-based software routers

Jin Zhao, Xinya Zhang, Xin Wang, Xiangyang Xue

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Tags: Computer science, CUDA, Networks, nVidia, nVidia GeForce 8800 GT

January 3, 2011 by hgpu

Cooperative Multitasking for GPU-Accelerated Grid Systems

Fumihiko Ino, Akihiro Ogita, Kentaro Oita, Kenichi Hagihara

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Tags: Computer science, CUDA, Grid, nVidia, nVidia GeForce 8800 GTS, nVidia GeForce GTX 280

January 3, 2011 by hgpu

An Accelerated 3D Navier-Stokes Solver for Flows in Turbomachines

Tobias Brandvik, Graham Pullan

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Tags: CUDA, Fluid dynamics, GPU cluster, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce GT 200

January 2, 2011 by hgpu

Generation of Random Numbers on Graphics Processors: Forced Indentation In Silico of the Bacteriophage HK97

A. Zhmurov, K. Rybnikov, Y. Kholodov, V. Barsegov

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Tags: Biological Physics, Chemical Physics, CUDA, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Physics, Pseudo-random number generators

January 2, 2011 by hgpu

Towards chip-on-chip neuroscience: fast mining of neuronal spike streams using graphics hardware

Yong Cao, Debprakash Patnaik, Sean Ponce, Jeremy Archuleta, Patrick Butler, Wu-chun Feng and Naren Ramakrishnan

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Tags: Computer science, CUDA, Data mining, Neuroscience, nVidia, nVidia GeForce GTX 280, Programming techniques

January 2, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Speeding up subset seed algorithm for intensive protein sequence comparison

Fast GPU-based space-time correlation for activity recognition in video sequences

Local Search Algorithms on Graphics Processing Units. A Case Study: The Permutation Perceptron Problem

Efficient Multiplication of Polynomials on Graphics Hardware

GPU-Based Conjugate Gradient Solver for Lattice QCD with Domain-Wall Fermions

Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors

Wave field synthesis for 3D audio: architectural prospectives

Achieving O(1) IP lookup on GPU-based software routers

Cooperative Multitasking for GPU-Accelerated Grid Systems

An Accelerated 3D Navier-Stokes Solver for Flows in Turbomachines

Generation of Random Numbers on Graphics Processors: Forced Indentation In Silico of the Bacteriophage HK97

Towards chip-on-chip neuroscience: fast mining of neuronal spike streams using graphics hardware

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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