high performance computing on graphics processing units: hgpu.org

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Molecular dynamics simulations of the relaxation processes in the condensed matter on GPUs

I. V. Morozov, A. M. Kazennov, R. G. Bystryi, G. E. Norman, V. V. Pisarev, V. V. Stegailov

Tags: Molecular dynamics, nVidia, nVidia GeForce GTX 260, Physics

January 25, 2011 by hgpu

Implementing molecular dynamics on hybrid high performance computers – short range forces

W. Michael Brown, Peng Wang, Steven J. Plimpton, Arnold N. Tharrington

Tags: Chemistry, CUDA, GPU cluster, Molecular dynamics, nVidia, Physics

January 22, 2011 by hgpu

Blasting through lattice calculations using CUDA

Kipton Barros, Ronald Babich, Richard Brower, Michael A. Clark, Claudio Rebbi

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 280, Physics, QCD, Tesla C870

January 18, 2011 by hgpu

An exploration of CUDA and CBEA for a gravitational wave data-analysis application (Einstein@Home)

Jens Breitbart, Gaurav Khanna

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Tags: Computational Physics, CUDA, General Relativity and Quantum Cosmology, nVidia, nVidia GeForce GTX 280, Package, Physics

January 18, 2011 by hgpu

Highly accelerated simulations of glassy dynamics using GPUs: caveats on limited floating-point precision

Peter H. Colberg, Felix Hofling

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Tags: Computational Physics, CUDA, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, Package, Physics, Soft Condensed Matter

January 18, 2011 by hgpu

Using generalized ensemble simulations and Markov state models to identify conformational states

Gregory R. Bowman, Xuhui Huang, Vijay S. Pande

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Source codes

Tags: CUDA, Molecular dynamics, Molecular modeling, nVidia, Package, Physics, Thermodynamics

January 16, 2011 by hgpu

Daubechies wavelets for high performance electronic structure calculations: The BigDFT project

Luigi Genovese, Brice Videau, Matthieu Ospici, Thierry Deutsch, Stefan Goedecker, Jean-Francois Mehaut

Source codes

Tags: Chemistry, Molecular modeling, OpenCL, Package, Physics

January 16, 2011 by hgpu

Efficient spectral and pseudospectral algorithms for 3D simulations of whistler-mode waves in a plasma

Nail A. Gumerov, Alexey V. Karavaev, A. Surjalal Sharma, Xi Shao, Konstantinos D. Papadopoulos

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Tags: Algorithms, Computational Physics, nVidia, Physics, Plasma physics, Tesla C1060

January 14, 2011 by hgpu

Simulating Lattice Spin Models on Graphics Processing Units

Tal Levy, Guy Cohen, Eran Rabani

Tags: Chemistry, CUDA, Monte Carlo simulation, nVidia, Physics

January 13, 2011 by hgpu

190 TFlops Astrophysical N-body Simulation on a Cluster of GPUs

Tsuyoshi Hamada, Keigo Nitadori

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Tags: Astrophysics, CUDA, GPU cluster, N-body simulation, nVidia, nVidia GeForce GTX 295, OpenMPI, Physics

January 13, 2011 by hgpu

Fitting Galaxies on GPUs

Benjamin R. Barsdell, David G. Barnes, Christopher J. Fluke

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Tags: Astrophysics, CUDA, FFT, Galaxy Astrophysics, Instrumentation and Methods for Astrophysics, nVidia, Physics, Tesla C1060

January 13, 2011 by hgpu

Using graphics processing units to generate random numbers

S. Hissoiny, P. Despres, B. Ozell

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Tags: CUDA, nVidia, nVidia GeForce GTX 280, Physics, Pseudo-random number generators

January 12, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Molecular dynamics simulations of the relaxation processes in the condensed matter on GPUs

Implementing molecular dynamics on hybrid high performance computers – short range forces

Blasting through lattice calculations using CUDA

An exploration of CUDA and CBEA for a gravitational wave data-analysis application (Einstein@Home)

Highly accelerated simulations of glassy dynamics using GPUs: caveats on limited floating-point precision

Using generalized ensemble simulations and Markov state models to identify conformational states

Daubechies wavelets for high performance electronic structure calculations: The BigDFT project

Efficient spectral and pseudospectral algorithms for 3D simulations of whistler-mode waves in a plasma

Simulating Lattice Spin Models on Graphics Processing Units

190 TFlops Astrophysical N-body Simulation on a Cluster of GPUs

Fitting Galaxies on GPUs

Using graphics processing units to generate random numbers

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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