high performance computing on graphics processing units: hgpu.org

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Molecular Dynamics Simulation of Macromolecules Using Graphics Processing Unit

Ji Xu, Ying Ren, Wei Ge, Xiang Yu, Xiaozhen Yang, Jinghai Li

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Tags: CUDA, Macromolecule, Materials Science, Molecular dynamics, nVidia, nVidia GeForce GT 200, Soft Condensed Matter

November 3, 2010 by hgpu

Accelerating Resolution-of-the-Identity Second-Order Moller-Plesset Quantum Chemistry Calculations with Graphical Processing Units

Leslie Vogt, Roberto Olivares-Amaya, Sean Kermes, Yihan Shao, Carlos Amador-Bedolla, Alan Aspuru-Guzik

Tags: Chemistry, Computational chemistry, CUBLAS, CUDA, Molecular modeling, nVidia, nVidia Quadro FX 5600

November 2, 2010 by hgpu

Discrete Wavelet Transform on Consumer-Level Graphics Hardware

Tien-Tsin Wong, Chi-Sing Leung, Pheng-Ann Heng, Jianqing Wang

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Tags: Discrete Wavelet Transform, Image processing, JPEG2000, nVidia, nVidia GeForce 7800 GTX, OpenGL, Package, Shaders

November 2, 2010 by hgpu

Real-time optical manipulation of micron sized structures using GPU generated holograms

S. Bianchi, R. Di Leonardo

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Tags: Computer holography, CUDA, Mesoscale and Nanoscale Physics, nVidia, nVidia GeForce GTX 260, Optical trapping, Physics, Soft Condensed Matter

November 2, 2010 by hgpu

Implementation of a Lattice–Boltzmann method for numerical fluid mechanics using the nVIDIA CUDA technology

E. Riegel, T. Indinger, N. Adams

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Tags: CUDA, Fluid dynamics, GPU cluster, Lattice Boltzmann model, LBUltra, nVidia, nVidia GeForce 8800 GTS, Presentation, Tesla C1060, Tesla S1070

November 2, 2010 by hgpu

Multilevel summation of electrostatic potentials using graphics processing units

David J. Hardy, John E. Stone, Klaus Schulten

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Tags: Chemistry, CUDA, Electrostatics, Molecular dynamics, Molecular modeling, Multilevel summation, nVidia, nVidia GeForce GTX 280, Physics, Tesla C870, Tesla D870

November 2, 2010 by hgpu

Fast and accurate protein substructure searching with simulated annealing and GPUs

Alex D. Stivala, Peter J. Stuckey, Anthony I. Wirth

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Tags: Bioinformatics, Biological Physics, Biology, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 285, Package, Tesla C1060

November 2, 2010 by hgpu

Algorithmic performance studies on graphics processing units

O. Schenk, M. Christen, H. Burkhart

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Tags: Computer science, Linear Algebra, Matrix decomposition, Nonlinear optimization, nVidia, nVidia GeForce 8800 GTX, Sparse direct solvers

November 2, 2010 by hgpu

On sorting and load balancing on GPUs

Daniel Cederman, Philippas Tsigas

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Sorting

November 2, 2010 by hgpu

General purpose molecular dynamics simulations fully implemented on graphics processing units

J. Anderson, C. Lorenz, A. Travesset

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Tags: Chemistry, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce 8800 GTX, Physics, Polymer Systems

November 2, 2010 by hgpu

Thread-Scalable Evaluation of Multi-Jet Observables

Walter Giele, Gerben Stavenga, Jan-Christopher Winter

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Tags: CUDA, Hadronic Colliders, High Energy Physics - Phenomenology, Jets, LO Computations, nVidia, Package, Physics, QCD, Tesla C1060

November 2, 2010 by hgpu

GPU-Based Interactive Visualization of Billion Point Cosmological Simulations

Tamas Szalay, Volker Springel, Gerard Lemson

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Tags: Astrophysics, Graphics, nVidia, nVidia GeForce 8800 GTX

November 2, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Molecular Dynamics Simulation of Macromolecules Using Graphics Processing Unit

Accelerating Resolution-of-the-Identity Second-Order Moller-Plesset Quantum Chemistry Calculations with Graphical Processing Units

Discrete Wavelet Transform on Consumer-Level Graphics Hardware

Real-time optical manipulation of micron sized structures using GPU generated holograms

Implementation of a Lattice–Boltzmann method for numerical fluid mechanics using the nVIDIA CUDA technology

Multilevel summation of electrostatic potentials using graphics processing units

Fast and accurate protein substructure searching with simulated annealing and GPUs

Algorithmic performance studies on graphics processing units

On sorting and load balancing on GPUs

General purpose molecular dynamics simulations fully implemented on graphics processing units

Thread-Scalable Evaluation of Multi-Jet Observables

GPU-Based Interactive Visualization of Billion Point Cosmological Simulations

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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