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CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

Svetlin Manavski, Giorgio Valle

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Smith-Waterman algorithm

October 28, 2010 by hgpu

cuInspiral: prototype gravitational waves detection pipeline fully coded on GPU using CUDA

Leone B. Bosi

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Tags: Computational Physics, CUDA, FFT, General Relativity and Quantum Cosmology, nVidia, nVidia GeForce GTX 275, Physics

October 28, 2010 by hgpu

Matched Filter Computation on FPGA, Cell and GPU

Z. K. Baker, M. B. Gokhale, J. L. Tripp

Tags: Computer science, FPGA, nVidia, nVidia GeForce 7900 GTX

October 28, 2010 by hgpu

An improved scheme of an interactive finite element model for 3D soft-tissue cutting and deformation

Wen Wu, Pheng A. Heng

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Tags: Computer science, Finite element method, Medicine, nVidia, nVidia GeForce FX 5950 Ultra, Surgical simulation

October 28, 2010 by hgpu

GpuCV: A GPU-Accelerated Framework for Image Processing and Computer Vision

Yannick Allusse, Patrick Horain, Ankit Agarwal, Cindula Saipriyadarshan

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Tags: Computer science, Computer vision, CUDA, GLSL, Image processing, nVidia, nVidia GeForce GTX 280, OpenGL, Package

October 28, 2010 by hgpu

A Generic and Scalable Pipeline for GPU Tetrahedral Grid Rendering

J. Georgii, R. Westermann

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Tags: 3D Graphics and Realism, Computer science, nVidia, nVidia GeForce 7900 GTX, Rendering

October 28, 2010 by hgpu

Adapting a message-driven parallel application to GPU-accelerated clusters

James C. Phillips, John E. Stone, Klaus Schulten

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Tags: Computer science, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia Quadro FX 5600

October 28, 2010 by hgpu

GPU-Based Monte-Carlo Volume Raycasting

C. R. Salama

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Tags: 3D Graphics and Realism, Computer science, nVidia, nVidia GeForce 8800 GTX, OpenGL, Raytracing, Rendering

October 28, 2010 by hgpu

Parallel Algorithm for GPU Processing; for use in High Speed Machine Vision Sensing of Cotton Lint Trash

Mathew Pelletier

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Tags: Computer science, Computer vision, Cotton, Image processing, nVidia, nVidia GeForce 8800 Ultra, Sensing

October 28, 2010 by hgpu

The gputools package enables GPU computing in R

Joshua Buckner, Justin Wilson, Mark Seligman, Brian Athey, Stanley Watson, Fan Meng

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Tags: Computer science, CUBLAS, CUDA, nVidia, Package

October 28, 2010 by hgpu

Accelerating Large Graph Algorithms on the GPU Using CUDA

Pawan Harish, P. Narayanan

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Tags: Computer science, CUDA, Graph theory, nVidia, nVidia GeForce 8800 GTX

October 28, 2010 by hgpu

Implementing Decision Trees and Forests on a GPU

Toby Sharp

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Tags: Computer science, Computer vision, HLSL, nVidia, nVidia GeForce GTX 280

October 28, 2010 by hgpu

HPCToolkit

Refining HPCToolkit for application performance analysis at exascale

Open Catalog of Best Practices for Modernization and Optimization

Optimizing the Weather Research and Forecasting Model with OpenMP Offload and Codee

Owl: Differential-based Side-Channel Leakage Detection for CUDA Applications

pSTL-Bench: Micro-benchmark suite designed to evaluate the scalability and efficiency of parallel C++ STL implementations

Exploring Scalability in C++ Parallel STL Implementations

GPU-Smash: Compression abstraction library

A Parallel Compression Pipeline for Improving GPU Virtualization Data Transfers

Noarr Structures

Abstractions for C++ code optimizations in parallel high-performance applications

$3D-fractal-generators$

HiCCL: A hierarchical collective communications library with portable optimizations

HiCCL: A Hierarchical Collective Communication Library

See all packages

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high performance computing on graphics processing units: hgpu.org

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

cuInspiral: prototype gravitational waves detection pipeline fully coded on GPU using CUDA

Matched Filter Computation on FPGA, Cell and GPU

An improved scheme of an interactive finite element model for 3D soft-tissue cutting and deformation

GpuCV: A GPU-Accelerated Framework for Image Processing and Computer Vision

A Generic and Scalable Pipeline for GPU Tetrahedral Grid Rendering

Adapting a message-driven parallel application to GPU-accelerated clusters

GPU-Based Monte-Carlo Volume Raycasting

Parallel Algorithm for GPU Processing; for use in High Speed Machine Vision Sensing of Cotton Lint Trash

The gputools package enables GPU computing in R

Accelerating Large Graph Algorithms on the GPU Using CUDA

Implementing Decision Trees and Forests on a GPU

Recent source codes

HPCToolkit

Open Catalog of Best Practices for Modernization and Optimization

Owl: Differential-based Side-Channel Leakage Detection for CUDA Applications

pSTL-Bench: Micro-benchmark suite designed to evaluate the scalability and efficiency of parallel C++ STL implementations

GPU-Smash: Compression abstraction library

Noarr Structures

3D-fractal-generators

SyncPerformance

VerCors: a verification toolset for verifying parallel and concurrent software

HiCCL: A hierarchical collective communications library with portable optimizations

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