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Experience of parallelizing cryo-EM 3D reconstruction on a CPU-GPU heterogeneous system

Linchuan Li, Xingjian Li, Guangming Tan, Mingyu Chen, Peiheng Zhang

Tags: Algorithms, Computer science, Cryo-EM, CUDA, Data parallelism, GPU cluster, Heterogeneous systems, MPI, nVidia, Performance, Tesla C2050

August 24, 2011 by hgpu

JCudaMP: OpenMP/Java on CUDA

Georg Dotzler, Ronald Veldema, Michael Klemm

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Tags: Code generation, Computer science, CUDA, Java, nVidia, nVidia GeForce GTX 280, OpenMP, Programming Languages, Programming techniques

August 23, 2011 by hgpu

Implementing the PGI Accelerator model

Michael Wolfe

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Tags: Compilers, Computer science, CUDA, High-level Languages, nVidia, OpenMP, Optimization, Programming Languages, Tesla C1060, Tesla S1070

August 23, 2011 by hgpu

Bounding the effect of partition camping in GPU kernels

Ashwin M. Aji, Mayank Daga, Wu-chun Feng

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Tags: Benchmarking, Computer science, CUDA, Memory, nVidia, nVidia GeForce GTX 280, Performance

August 23, 2011 by hgpu

Fast parallel surface and solid voxelization on GPUs

Michael Schwarz, Hans-Peter Seidel

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Tags: 3D Graphics and Realism, Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480

August 23, 2011 by hgpu

High performance content-based matching using GPUs

Alessandro Margara, Gianpaolo Cugola

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Tags: Algorithms, Computer science, CUDA, Information Retrieval, nVidia, nVidia GeForce GTX 460, Package, Performance, Programming techniques

August 23, 2011 by hgpu

Performance Modelling and Traffic Characterisation of Optical Networks

Harry Mouchos, Athanasios Tsokanos and Demetres D. Kouvatsos

Tags: Computer science, CUDA, Network communications, Networks, nVidia

August 23, 2011 by hgpu

Auto-tuning 3-D FFT library for CUDA GPUs

Akira Nukada, Satoshi Matsuoka

Tags: Algorithms, Computer science, CUDA, FFT, Mathematical Software, nVidia, Performance

August 22, 2011 by hgpu

Evaluation of streaming aggregation on parallel hardware architectures

Scott Schneidert, Henrique Andrade, Bugra Gedik, Kun-Lung Wu, Dimitrios S. Nikolopoulos

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Tags: Cell processor, Computer science, CUDA, nVidia, nVidia GeForce GTX 285, OpenMP, Performance

August 22, 2011 by hgpu

Floating-point data compression at 75 Gb/s on a GPU

Molly A. O'Neil, Martin Burtscher

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Tags: Algorithms, Compression, Computer science, CUDA, nVidia, nVidia GeForce FX 5600, Package, Performance, Programming techniques

August 22, 2011 by hgpu

Towards metaprogramming for parallel systems on a chip

Lee Howes, Anton Lokhmotov, Alastair F. Donaldson, Paul H.J. Kell

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 280, Performance, Programming techniques

August 22, 2011 by hgpu

Load Balancing versus Occupancy Maximization on Graphics Processing Units: The Generalized Hough Transform as a Case Study

Juan Gomez-Luna, Jose Maria Gonzalez-Linares, Jose Ignacio Benavides, Emilio L. Zapata, Nicolas Guil

Tags: Computer science, CUDA, Image processing, nVidia, Programming techniques

August 22, 2011 by hgpu

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

Experiences with implementing Kokkos’ SYCL backend

ROCm's implementation of Gromacs

GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

See all packages

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high performance computing on graphics processing units: hgpu.org

Experience of parallelizing cryo-EM 3D reconstruction on a CPU-GPU heterogeneous system

JCudaMP: OpenMP/Java on CUDA

Implementing the PGI Accelerator model

Bounding the effect of partition camping in GPU kernels

Fast parallel surface and solid voxelization on GPUs

High performance content-based matching using GPUs

Performance Modelling and Traffic Characterisation of Optical Networks

Auto-tuning 3-D FFT library for CUDA GPUs

Evaluation of streaming aggregation on parallel hardware architectures

Floating-point data compression at 75 Gb/s on a GPU

Towards metaprogramming for parallel systems on a chip

Load Balancing versus Occupancy Maximization on Graphics Processing Units: The Generalized Hough Transform as a Case Study

Recent source codes

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

ROCm's implementation of Gromacs

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

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