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SkePU 2: Flexible and Type-Safe Skeleton Programming for Heterogeneous Parallel Systems

August Ernstsson, Christoph Kessler

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Tags: Compilers, Computer science, CUDA, Heterogeneous systems, Intel Xeon Phi, nVidia, OpenCL, OpenMP, Package, Tesla K20

January 28, 2018 by hgpu

Revisiting Online Autotuning for Sparse-Matrix Vector Multiplication Kernels on Next-Generation Architectures

Simon Garcia De Gonzalo, Simon D. Hammond, Christian R. Trott, Wen-Mei Hwu

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Tags: Auto-Tuning, Computer science, CUDA, Intel Xeon Phi, nVidia, Sparse matrix, Tesla K20, Tesla K40, Tesla K80, Tesla P100

January 28, 2018 by hgpu

Communication Architectures for Scalable GPU-centric Computing Systems

Benjamin Klenk

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Tags: Algorithms, Benchmarking, Computer science, CUDA, Heterogeneous systems, nVidia, Tesla K20, Thesis

January 28, 2018 by hgpu

Improving Communication Performance in GPU-Accelerated HPC Clusters

Iman Faraji

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Tags: Computer science, CUDA, GPU cluster, MPI, nVidia, Package, Performance, Thesis

January 28, 2018 by hgpu

Comprehensive Optimization of Parametric Kernels for Graphics Processing Units

Xiaohui Chen, Marc Moreno-Maza, Jeeva Paudel, Ning Xie

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Tags: Code generation, Computer science, CUDA, LLVM, nVidia, Package, Performance, PTX, Symbolic Computation, Tesla M2050

January 20, 2018 by hgpu

SuperNeurons: Dynamic GPU Memory Management for Training Deep Neural Networks

Linnan Wang, Jinmian Ye, Yiyang Zhao, Wei Wu, Ang Li, Shuaiwen Leon Song, Zenglin Xu, Tim Kraska

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Tags: Computer science, CUDA, Deep learning, Machine learning, Neural networks, nVidia, Tesla K40

January 20, 2018 by hgpu

Fast and Flexible GPU Accelerated Binding Free Energy Calculations within the AMBER Molecular Dynamics Package

Daniel J. Mermelstein, Charles Lin, Gard Nelson, Rachael Kretsch, J. Andrew McCammon, Ross C. Walker

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 1080 Ti, nVidia GeForce GTX Titan X

January 20, 2018 by hgpu

Evaluation of Machine Learning Fameworks on Finis Terrae II

Andres Gomez Tato

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Tags: Algorithms, Benchmarking, Computer science, CUDA, Deep learning, Machine learning, nVidia, Performance, Tesla K80

January 20, 2018 by hgpu

Graph Processing on GPUs: A Survey

Xuanhua Shi, Zhigao Zheng, Yongluan Zhou, Hai Jin, Ligang He, Bo Liu, Qiang-Sheng Hua

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Tags: Computer science, CUDA, Graph theory, nVidia, OpenCL, survey

January 13, 2018 by hgpu

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

Sven Warris, N. Roshan N. Timal, Marcel Kempenaar, Arne M. Poortinga, Henri van de Geest, Ana L. Varbanescu, Jan-Peter Nap

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 1070, OpenCL, Package, Python, Sequence alignment, Smith-Waterman algorithm

January 13, 2018 by hgpu

GPU Acceleration of a High-Order Discontinuous Galerkin Incompressible Flow Solver

Ali Karakus, Noel Chalmers, Kasia Swirydowicz, Timothy Warburton

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Tags: Computational Physics, CUDA, Fluid dynamics, Navier-Stokes equations, NSEs, Numerical Analysis, nVidia, Tesla P100

January 6, 2018 by hgpu

Rubus: A compiler for seamless and extensible parallelism

Muhammad Adnan, Faisal Aslam, Zubair Nawaz, Syed Mansoor Sarwar

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Tags: Aparapi, Benchmarking, Computer science, CUDA, Java, Matrix multiplication, nVidia, nVidia GeForce GT 630 M, OpenCL, OpenGL, Package

January 6, 2018 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

SkePU 2: Flexible and Type-Safe Skeleton Programming for Heterogeneous Parallel Systems

Revisiting Online Autotuning for Sparse-Matrix Vector Multiplication Kernels on Next-Generation Architectures

Communication Architectures for Scalable GPU-centric Computing Systems

Improving Communication Performance in GPU-Accelerated HPC Clusters

Comprehensive Optimization of Parametric Kernels for Graphics Processing Units

SuperNeurons: Dynamic GPU Memory Management for Training Deep Neural Networks

Fast and Flexible GPU Accelerated Binding Free Energy Calculations within the AMBER Molecular Dynamics Package

Evaluation of Machine Learning Fameworks on Finis Terrae II

Graph Processing on GPUs: A Survey

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

GPU Acceleration of a High-Order Discontinuous Galerkin Incompressible Flow Solver

Rubus: A compiler for seamless and extensible parallelism

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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