high performance computing on graphics processing units: hgpu.org

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SW# – GPU enabled exact alignments on genome scale

Matija Korpar, Mile Sikic

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, nVidia GeForce GTX 560, nVidia GeForce GTX 570, nVidia GeForce GTX 690, Package, Sequence alignment, Smith-Waterman algorithm

April 23, 2013 by hgpu

Computer Simulation of Saturn’s Ring Structure

Cole Kendrick

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Tags: Astrophysics, ATI, ATI Radeon HD 5850, Gravitation, MPI, N-body simulation, nVidia, nVidia GeForce GTX 580, OpenCL, Package, Tesla S2050

April 21, 2013 by hgpu

MrBayes tgMC3: A Tight GPU Implementation of MrBayes

Cheng Ling, Tsuyoshi Hamada, Jianing Bai, Xianbin Li, Douglas Chesters, Weimin Zheng, Weifeng Shi

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Tags: Algorithms, Bayesian, Computer science, CUDA, nVidia, nVidia GeForce GTX 480, Package

April 18, 2013 by hgpu

A Many-core Machine Model for Designing Algorithms with Minimum Parallelism Overheads

Sardar Anisul Haque, Marc Moreno Maza, Ning Xie

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Tags: Algorithms, CUDA, Package

April 15, 2013 by hgpu

B-Calm: an Open-Source Multi-Gpu-Based 3D-FDTD with Multi-Pole Dispersion for Plasmonics

Pierre Wahl, Dany-Sebastien Ly-Gagnon, Christof Debaes, Jurgen Van Erps, Nathalie Vermeulen, David A. B. Miller, Hugo Thienpont

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Tags: Algorithms, CUDA, Electrodynamics, FDTD, Finite-difference time-domain, nVidia, Package, Tesla C2075

April 13, 2013 by hgpu

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

Yongchao Liu, Adrianto Wirawan, Bertil Schmidt

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 680, nVidia GeForce GTX 690, Package, PTX, Sequence alignment, Smith-Waterman algorithm

April 10, 2013 by hgpu

OpenCL Fast Fourier Transform

Ruobing Li

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Tags: Computer science, FFT, nVidia, OpenCL, Package, Tesla M2070

April 9, 2013 by hgpu

A Performance Comparison of Different Graphics Processing Units Running Direct N-Body Simulations

R. Capuzzo-Dolcettaa, M. Spera

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Tags: Astrophysics, ATI, ATI Radeon HD 6970, ATI Radeon HD 7870, ATI Radeon HD 7970, Gravitation, Instrumentation and Methods for Astrophysics, N-body simulation, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 680, OpenCL, Package, Tesla C1060, Tesla C2050, Tesla K20

April 9, 2013 by hgpu

Atomic-free Irregular Computations on GPUs

Rupesh Nasre, Martin Burtscher, Keshav Pingali

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, Package, Performance, Tesla K20

April 7, 2013 by hgpu

Adapting Particle Filter Algorithms to Many-Core Architectures

Mehdi Chitchian, Alexander S. van Amesfoort, Andrea Simonetto, Tamas Keviczky, Henk J. Sips

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Tags: Algorithms, ATI, ATI Radeon HD 6970, ATI Radeon HD 7970, Bayesian, Computer science, Computer vision, CUDA, Filtering, Monte Carlo simulation, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 680, OpenCL, Package, Particle filtering

April 4, 2013 by hgpu

Optimising Purely Functional GPU Programs

Trevor L. McDonell, Manuel M. T. Chakravarty, Gabriele Keller, Ben Lippmeier

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Tags: Computer science, CUDA, Haskell, nVidia, Package, Performance, Tesla T10

April 4, 2013 by hgpu

C Language Extensions for Hybrid CPU/GPU Programming with StarPU

Ludovic Courtes

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Tags: Computer science, Hybrid computing, Mathematical Software, MPI, OpenCL, Package

April 4, 2013 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

SW# – GPU enabled exact alignments on genome scale

Computer Simulation of Saturn’s Ring Structure

MrBayes tgMC3: A Tight GPU Implementation of MrBayes

A Many-core Machine Model for Designing Algorithms with Minimum Parallelism Overheads

B-Calm: an Open-Source Multi-Gpu-Based 3D-FDTD with Multi-Pole Dispersion for Plasmonics

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

OpenCL Fast Fourier Transform

A Performance Comparison of Different Graphics Processing Units Running Direct N-Body Simulations

Atomic-free Irregular Computations on GPUs

Adapting Particle Filter Algorithms to Many-Core Architectures

Optimising Purely Functional GPU Programs

C Language Extensions for Hybrid CPU/GPU Programming with StarPU

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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