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QCDGPU: open-source package for Monte Carlo lattice simulations on OpenCL-compatible multi-GPU systems

Vadim Demchik, Natalia Kolomoyets

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Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 6970, ATI Radeon HD 7970, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 560 M, nVidia GeForce GTX 560 Ti, OpenCL, Package, Phase transition, Physics, Pseudo-random number generators, QCD

October 21, 2013 by hgpu

Scaling Soft Matter Physics to Thousands of GPUs in Parallel

Alan Gray, Alistair Hart, Oliver Henrich, Kevin Stratford

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Tags: CUDA, Fluid dynamics, Lattice Boltzmann model, Molecular dynamics, nVidia, Physics, Tesla K20

October 15, 2013 by hgpu

GALAMOST: GPU-accelerated large-scale molecular simulation toolkit

You-Liang Zhu, Hong Liu, Zhan-Wei Li, Hu-Jun Qian, Giuseppe Milano, Zhong-Yuan Lu

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Tags: Chemical Physics, Computational Physics, CUDA, Molecular simulation, nVidia, nVidia GeForce GTX 580, Phase transition, Physics, Soft Condensed Matter, Tesla K20

October 10, 2013 by hgpu

Direct deconvolution of radio synthesis images using L1 minimisation

Stephen J. Hardy

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Tags: Astrophysics, CUDA, Image reconstruction, Instrumentation and Methods for Astrophysics, nVidia, Package, Tesla M2050

October 10, 2013 by hgpu

libcloudph++ 0.1: single-moment bulk, double-moment bulk, and particle-based warm-rain microphysics library in C++

Sylwester Arabas, Anna Jaruga, Hanna Pawlowska, Wojciech W. Grabowski

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Tags: Algorithms, CUDA, Earth and Space Sciences, nVidia, nVidia Quadro 600, Package, Physics, Thrust

October 8, 2013 by hgpu

Porting Large HPC Applications to GPU Clusters: The Codes GENE and VERTEX

Tilman Dannert, Andreas Marek, Markus Rampp

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Tags: Computational Physics, CUDA, GPU cluster, Heterogeneous systems, nVidia, PC cluster, Physics, Plasma physics, Solar and Stellar Astrophysics, Tesla K20

October 8, 2013 by hgpu

Performance evaluation of CUDA programming for machining simulation

Felix Abecassis, Sylvain Lavernhe, Christophe Tournier, Pierre-Alain Boucard

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Tags: Computer science, CUDA, nVidia, nVidia Quadro 4000, Physics

October 7, 2013 by hgpu

Measurements of performance of hardware and general purpose classical molecular dynamics simulation software

Jose O. Sotero-Esteva

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Tags: CUDA, Molecular dynamics, nVidia, Physics, Tesla C2075

October 5, 2013 by hgpu

A graphics processor-based intranuclear cascade and evaporation simulation

H. Wan Chan Tseung, C. Beltran

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Tags: Computational Physics, CUDA, Monte Carlo simulation, nVidia, nVidia GeForce GTX 680, Physics

October 2, 2013 by hgpu

Evaluation of disconnected quark loops for hadron structure using GPUs

C. Alexandrou, M. Constantinou, V. Drach, K. Hadjiyiannakou, K. Jansen, G. Koutsou, A. Strelchenko, A. Vaquero

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Tags: CUDA, High Energy Physics - Lattice, Nuclear Theory, nVidia, Physics, Tesla M2070

September 29, 2013 by hgpu

The density matrix renormalization group algorithm on kilo-processor architectures: implementation and trade-offs

Csaba Nemes, Gergely Barcza, Zoltan Nagy, Ors Legeza, Peter Szolgay

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Tags: Algorithms, Condensed matter, CUDA, FPGA, Numerical Analysis, nVidia, nVidia GeForce GTX 570, Physics, Tesla K20

September 25, 2013 by hgpu

Preconditioned conjugate gradient solver for structural problems

Xiangge Li

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Tags: Computer science, Conjugate gradient solver, CUDA, nVidia, Physics, Tesla M2070

September 20, 2013 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

QCDGPU: open-source package for Monte Carlo lattice simulations on OpenCL-compatible multi-GPU systems

Scaling Soft Matter Physics to Thousands of GPUs in Parallel

GALAMOST: GPU-accelerated large-scale molecular simulation toolkit

Direct deconvolution of radio synthesis images using L1 minimisation

libcloudph++ 0.1: single-moment bulk, double-moment bulk, and particle-based warm-rain microphysics library in C++

Porting Large HPC Applications to GPU Clusters: The Codes GENE and VERTEX

Performance evaluation of CUDA programming for machining simulation

Measurements of performance of hardware and general purpose classical molecular dynamics simulation software

A graphics processor-based intranuclear cascade and evaporation simulation

Evaluation of disconnected quark loops for hadron structure using GPUs

The density matrix renormalization group algorithm on kilo-processor architectures: implementation and trade-offs

Preconditioned conjugate gradient solver for structural problems

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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