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FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours

Shenggan Cheng, Ruidong Wu, Zhongming Yu, Binrui Li, Xiwen Zhang, Jian Peng, Yang You

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Tags: Biology, Computer science, CUDA, Machine learning, nVidia, nVidia A100, Package

March 6, 2022 by hgpu

Enabling On-Device Smartphone GPU based Training: Lessons Learned

Anish Das, Young D. Kwon, Jagmohan Chauhan, Cecilia Mascolo

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Tags: Computer science, Deep learning, Neural networks, OpenCL

March 6, 2022 by hgpu

gLBM: A GPU enabled Lattice Boltzmann Method Library

Aaron Bray, Rachel B. Clipp, M. Umar Qureshi, Sorin Mitran, Andinet Enquobahrie

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Tags: cfd, CUDA, Fluid dynamics, Lattice Boltzmann model, nVidia, Package

February 20, 2022 by hgpu

A ML-based resource utilization OpenCL GPU-kernel fusion model

Usman Ahmed, Jerry Chun-Wei Lin, Gautam Srivastava

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Tags: Computer science, Data parallelism, HPC, Machine learning, nVidia, nVidia GeForce GT 740 M, nVidia GeForce GTX 760, OpenCL

February 20, 2022 by hgpu

A Comprehensive Benchmark of Deep Learning Libraries on Mobile Devices

Qiyang Zhang, Xiang Li, Xiangying Che, Xiao Ma, Ao Zhou, Mengwei Xu, Shangguang Wang, Yun Ma, Xuanzhe Liu

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Tags: ARM, Benchmarking, Computer science, Deep learning, OpenCL, OpenGL, Vulkan

February 20, 2022 by hgpu

Heuristic Adaptability to Input Dynamics for SpMM on GPUs

Guohao Dai, Guyue Huang, Shang Yang, Zhongming Yu, Hengrui Zhang, Yufei Ding, Yuan Xie, Huazhong Yang, Yu Wang

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Tags: Algorithms, CUDA, Matrix multiplication, Neural networks, nVidia, nVidia GeForce RTX 2080, nVidia GeForce RTX 3090, Package, Sparse matrix, Tesla V100

February 20, 2022 by hgpu

Lightning: Scaling the GPU Programming Model Beyond a Single GPU

Stijn Heldens, Pieter Hijma, Ben van Werkhoven, Jason Maassen, Rob V. van Nieuwpoort

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Tags: Computer science, CUDA, Distributed computing, nVidia, OpenCL, Package, Performance, Tesla P100

February 20, 2022 by hgpu

Electrical-Level Attacks on CPUs, FPGAs, and GPUs: Survey and Implications in the Heterogeneous Era

Dina G. Mahmoud, Vincent Lenders, Mirjana Stojilović

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Tags: Computer science, FPGA, Heterogeneous systems, Security, survey

February 13, 2022 by hgpu

Pattern-based Programming Abstractions for Heterogeneous Parallel Computing

August Ernstsson

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Tags: Computer science, CUDA, Heterogeneous systems, High-level Languages, nVidia, OpenCL, Tesla K20, Thesis

February 13, 2022 by hgpu

The Ecological Footprint of Neural Machine Translation Systems

Dimitar Sherionov, Eva Vanmassenhove

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Tags: Artificial intelligence, Computer science, CUDA, Deep learning, LSTM, NLP, nVidia, nVidia GeForce GTX 1080 Ti, Package, Tesla P100

February 13, 2022 by hgpu

Improving Loop Parallelization by a Combination of Static and Dynamic Analyses in HLS

Florian Dewald, Johanna Rohde, Christian Hochberger, Heiko Mantel

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Tags: Computer science, FPGA, HLS, Package

February 13, 2022 by hgpu

FC_ACCEL: Enabling Efficient, Low-Latency and Flexible Inference in DNN Fully Connected Layers, using Optimized Checkerboard Block matrix decomposition, fast scheduling, and a resource efficient 1D PE array with a custom HBM2 memory subsystem

Nick Iliev, Amit R Trivedi

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Tags: CNN, Computer science, Deep learning, FPGA, Matrix decomposition, Neural networks, nVidia, nVidia Jetson AGX Xavier, Performance

February 13, 2022 by hgpu

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

LLOR: Automatic Repair of OpenMP Programs

LLOR: Automated Repair of OpenMP Programs

Solomon: Simple Off-LOading Macros Orchestrating multiple Notations

Unified schemes for directive-based GPU offloading

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

PyOMP: Parallel programming for CPUs and GPUs with OpenMP and Python

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours

Enabling On-Device Smartphone GPU based Training: Lessons Learned

gLBM: A GPU enabled Lattice Boltzmann Method Library

A ML-based resource utilization OpenCL GPU-kernel fusion model

A Comprehensive Benchmark of Deep Learning Libraries on Mobile Devices

Heuristic Adaptability to Input Dynamics for SpMM on GPUs

Lightning: Scaling the GPU Programming Model Beyond a Single GPU

Electrical-Level Attacks on CPUs, FPGAs, and GPUs: Survey and Implications in the Heterogeneous Era

Pattern-based Programming Abstractions for Heterogeneous Parallel Computing

The Ecological Footprint of Neural Machine Translation Systems

Improving Loop Parallelization by a Combination of Static and Dynamic Analyses in HLS

FC_ACCEL: Enabling Efficient, Low-Latency and Flexible Inference in DNN Fully Connected Layers, using Optimized Checkerboard Block matrix decomposition, fast scheduling, and a resource efficient 1D PE array with a custom HBM2 memory subsystem

Recent source codes

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

LLOR: Automatic Repair of OpenMP Programs

Solomon: Simple Off-LOading Macros Orchestrating multiple Notations

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

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