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Advantages and GPU implementation of high-performance indexed DNA search based on suffix arrays

Gustavo Encarnacao, Nuno Sebastiao, Nuno Roma

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 580, Suffix trees

November 13, 2011 by hgpu

Fast Level Set Segmentation of Biomedical Images using Graphics Processing Units

Hormuz Mostofi

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Tags: Algorithms, Computer vision, CUDA, Image processing, Medicine, nVidia, nVidia GeForce 8600 M GT, Package

November 13, 2011 by hgpu

Efficient GPU Implementation for Particle in Cell Algorithm

Rejith George Joseph, Girish Ravunnikutty, Sanjay Ranka, Eduardo D'Azevedo, Scott Klasky

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Tags: Algorithms, CUDA, Electrodynamics, nVidia, Package, Particle-in-cell methods, Physics, Plasma physics, Tesla T10

November 13, 2011 by hgpu

Molecular Docking on FPGA and GPU Platforms

I. Pechan, B. Feher

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Tags: Algorithms, Bioinformatics, Biology, CUDA, FPGA, nVidia, nVidia GeForce GT 220, nVidia GeForce GTX 260

November 13, 2011 by hgpu

Efficiently Computing Tensor Eigenvalues on a GPU

Grey Ballard, Tamara Kolda, Todd Plantenga

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Tags: Algorithms, CUDA, Mathematics, nVidia, Tesla C2050

November 12, 2011 by hgpu

rCUDA: Reducing the number of GPU-based accelerators in high performance clusters

J. Duato, Pena, A.J. a, F. Silla, R. Mayo, E.S. Quintana-Orti

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Tags: Computer science, CUDA, Distributed computing, Energy-efficient computing, nVidia, Package, PC cluster, Tesla C1060

November 12, 2011 by hgpu

A Run-Time Adaptive FPGA Architecture for Monte Carlo Simulations

Xiang Tian, C. Bouganis

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Tags: Computer science, FPGA, Monte Carlo simulation

November 12, 2011 by hgpu

Evaluation of an accelerator architecture for Speckle Reducing Anisotropic Diffusion

Siddharth Nilakantan, Srikanth Annangi, Nikhil Gulati, Karthik Sangaiah, Mark Hempstead

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Tags: Algorithms, Computer science, CUDA, Embedded high-performance computing, nVidia, nVidia GeForce 8800 GTX, OpenMP, Performance, Ultrasound

November 12, 2011 by hgpu

A multi-GPU acceleration for 3D imaging of the prostate

E. A. Attardo, A. Borsic, R. J. Halter

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Tags: CUDA, Medicine, nVidia, Tesla S1070, Tomography, Ultrasound

November 12, 2011 by hgpu

Sustainable GPU Computing at Scale

Justin Y. Shi, Moussa Taifi, Abdallah Khreishah, Jie Wu

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Tags: Computer science, CUBLAS, CUDA, Energy-efficient computing, Fault tolerance, nVidia, OpenMPI, Tesla S1070

November 12, 2011 by hgpu

Exploiting Heterogeneity for Energy Efficiency in Chip Multiprocessors

V. Saripalli, G. Sun, A. Mishra, Y. Xie, S. Datta, V. Narayanan

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Tags: Computer science, Energy-efficient computing, Heterogeneous systems

November 12, 2011 by hgpu

GSNP: A DNA Single-Nucleotide Polymorphism Detection System with GPU Acceleration

Mian Lu, Jiuxin Zhao, Qiong Luo, Bingqiang Wang, Shaohua Fu, Zhe Lin

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Tags: Bioinformatics, Biology, Compression, nVidia, Package, Sorting, Tesla M2050

November 12, 2011 by hgpu

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Towards Efficient and Practical GPU Multitasking in the Era of LLM

Bandicoot: C++ library for GPU accelerated linear algebra

Bandicoot: A Templated C++ Library for GPU Linear Algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

The Fused Kernel Library: A C++ API to Develop Highly-Efficient GPU Libraries

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

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high performance computing on graphics processing units: hgpu.org

Applications

Advantages and GPU implementation of high-performance indexed DNA search based on suffix arrays

Fast Level Set Segmentation of Biomedical Images using Graphics Processing Units

Efficient GPU Implementation for Particle in Cell Algorithm

Molecular Docking on FPGA and GPU Platforms

Efficiently Computing Tensor Eigenvalues on a GPU

rCUDA: Reducing the number of GPU-based accelerators in high performance clusters

A Run-Time Adaptive FPGA Architecture for Monte Carlo Simulations

Evaluation of an accelerator architecture for Speckle Reducing Anisotropic Diffusion

A multi-GPU acceleration for 3D imaging of the prostate

Sustainable GPU Computing at Scale

Exploiting Heterogeneity for Energy Efficiency in Chip Multiprocessors

GSNP: A DNA Single-Nucleotide Polymorphism Detection System with GPU Acceleration

Recent source codes

CrossTL: Universal Programming Language & Translator

TBD-GPU

DG-SWEM - The Discontinuous Galerkin Shallow Water Equation Model

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Bandicoot: C++ library for GPU accelerated linear algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

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