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Exact and complete short read alignment to microbial genomes using GPU programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

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Tags: Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, nVidia GeForce GTX 280, Package

April 11, 2011 by hgpu

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Yongchao Liu, Bertil Schmidt, Douglas Maskell

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Tags: Bioinformatics, Biology, CUDA, MPI, Next-Generation sequencing, nVidia, OpenMP, Package, Tesla S1070

April 11, 2011 by hgpu

Simulation of bevel gear cutting with GPGPUs-performance and productivity

Sandra Wienke, Dmytro Plotnikov, Dieter an Mey, Christian Bischof, Ario Hardjosuwito, Christof Gorgels, Christian Brecher

Tags: Computational Engineering, Computer science, CUDA, nVidia, OpenCL, OpenMP

April 11, 2011 by hgpu

GPU Accelerated Adams-Bashforth Multirate Discontinuous Galerkin FEM Simulation of High-Frequency Electromagnetic Fields

Nico Godel, Steffen Schomann, Tim Warburton, Markus Clemens

Tags: CUDA, Electrodynamics, Electromagnetics simulation, FEM, Finite element method, nVidia

April 10, 2011 by hgpu

GPU acceleration of the dynamics routine in the HIRLAM weather forecast model

Van Thieu Vu, Gerard Cats, Lex Wolters

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Tags: CUDA, Earth and Space Sciences, nVidia, nVidia GeForce 9800 GX2, Weather Prediction Model

April 10, 2011 by hgpu

Power-Efficient Work Distribution Method for CPU-GPU Heterogeneous System

Guibin Wang, Xiaoguang Ren

Tags: Computer science, Energy-efficient computing, Heterogeneous systems

April 10, 2011 by hgpu

Real-time stereo matching: A cross-based local approach

Jiangbo Lu, Ke Zhang, Gauthier Lafruit, Francky Catthoor

Tags: Algorithms, Image processing, Real-time graphics

April 10, 2011 by hgpu

Accelerating global sequence alignment using CUDA compatible multi-core GPU

T.R.P. Siriwardena, D.N. Ranasinghe

Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence alignment

April 10, 2011 by hgpu

A Real-Time Soft Shadow Rendering Algorithm by Occluder-Discretization

Yong Hu, Yue Qi, Xukun Shen

Tags: 3D Graphics and Realism, Computer science, Rendering

April 10, 2011 by hgpu

A Parallel Algorithm for Dot Product over Word-Size Finite Field Using Floating-Point Arithmetic

Jeremy Jean, Stef Graillat

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Tags: Algorithms, Computer science, CUDA, Floating point error, nVidia, Tesla C1060

April 10, 2011 by hgpu

Fast seismic modeling and Reverse Time Migration on a GPU cluster

Rached Abdelkhalek, Henri Calendra, Olivier Coulaud, Jean Roman, Guillaume Latu

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Tags: CUDA, Earth and Space Sciences, Finite difference, GPU cluster, nVidia, Seismic modeling, Seismology, Tesla S1070

April 10, 2011 by hgpu

FFT Implementation on a Streaming Architecture

J. Lobeiras, M. Amor, R. Doallo

Tags: ATI, Brook, FFT, Signal processing

April 10, 2011 by hgpu

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

Enhancing Deployment-Time Predictive Model Robustness for Code Analysis and Optimization

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

Scalable Access-Pattern Aware I/O Acceleration and Multi-Tiered Data Management for HPC and AI Workloads

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

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high performance computing on graphics processing units: hgpu.org

Applications

Exact and complete short read alignment to microbial genomes using GPU programming

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Simulation of bevel gear cutting with GPGPUs-performance and productivity

GPU Accelerated Adams-Bashforth Multirate Discontinuous Galerkin FEM Simulation of High-Frequency Electromagnetic Fields

GPU acceleration of the dynamics routine in the HIRLAM weather forecast model

Power-Efficient Work Distribution Method for CPU-GPU Heterogeneous System

Real-time stereo matching: A cross-based local approach

Accelerating global sequence alignment using CUDA compatible multi-core GPU

A Real-Time Soft Shadow Rendering Algorithm by Occluder-Discretization

A Parallel Algorithm for Dot Product over Word-Size Finite Field Using Floating-Point Arithmetic

Fast seismic modeling and Reverse Time Migration on a GPU cluster

FFT Implementation on a Streaming Architecture

Recent source codes

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

HPX: a C++ Standard Library for Concurrency and Parallelism

TorchQC: Quantum Dynamics and Machine Learning

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

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