high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Data-intensive document clustering on GPU clusters

Yongpeng Zhang, Frank Mueller, Xiaohui Cui, Thomas Potok

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Tags: Computer science, CUDA, Data mining, GPU cluster, nVidia

November 7, 2010 by hgpu

Real-time 3D registration using GPU

Soon-Yong Park, Sung-In Choi, Jun Kim, Jeong Chae

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce GTX 260

November 7, 2010 by hgpu

GPU accelerated simulations of bluff body flows using vortex particle methods

Diego Rossinelli, Michael Bergdorf, Georges-Henri Cottet, Petros Koumoutsakos

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Tags: CUDA, Fluid dynamics, nVidia, nVidia GeForce 8000 GTS, nVidia GeForce 9800 GX2, nVidia Quadro FX 5600, OpenGL

November 7, 2010 by hgpu

Biomolecular electrostatics simulation with a parallel FMM-based BEM, using up to 512 GPUs

Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, L. A. Barba, Tsuyoshi Hamada

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Tags: Chemistry, CUDA, GPU cluster, Molecular modeling, nVidia, nVidia GeForce GTX 295, Package

November 7, 2010 by hgpu

Efficient nonbonded interactions for molecular dynamics on a graphics processing unit

P. Eastman, V. S. Pande

Tags: Chemistry, Computational chemistry, Molecular dynamics, Solvent effects

November 7, 2010 by hgpu

MDLab: A molecular dynamics simulation prototyping environment

Trevor Cickovski, Santanu Chatterjee, Jacob Wenger, Christopher R. Sweet, Jesus A. Izaguirre

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Tags: Chemistry, Computational chemistry, CUDA, Molecular dynamics, nVidia, Package, Python

November 6, 2010 by hgpu

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Yongchao Liu, Bertil Schmidt, Douglas Maskell

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Smith-Waterman algorithm

November 6, 2010 by hgpu

Parallel GPU-based data-dependent triangulations

Michal Cervenansky, Zsolt Toth, Juraj Starinsky, Andrej Ferko, Milos Sramek

Tags: Image processing, Image reconstruction

November 6, 2010 by hgpu

Automatic fitting of spiking neuron models to electrophysiological recordings

Cyrille Rossant, Dan F. Goodman, Jonathan Platkiewicz, Romain Brette

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Tags: Adaptive threshold, Biology, CUDA, Distributed computing, Neuroscience, nVidia, nVidia GeForce GTX 295, Optimization, Package

November 6, 2010 by hgpu

High-Throughput All-Atom Molecular Dynamics Simulations Using Distributed Computing

I. Buch, M. J. Harvey, T. Giorgino, D. P. Anderson, G. De Fabritiis

Tags: Biochemistry, Chemistry, Molecular dynamics, Thermodynamics

November 6, 2010 by hgpu

A GPU implementation for LBG and SOM training

Yi Xiao, Chi Leung, Tze-Yui Ho, Ping-Man Lam

Tags: Computer science, Neural Computing, Self-organizing map, Vector quantization

November 6, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

Data-intensive document clustering on GPU clusters

Real-time 3D registration using GPU

GPU accelerated simulations of bluff body flows using vortex particle methods

Biomolecular electrostatics simulation with a parallel FMM-based BEM, using up to 512 GPUs

Efficient nonbonded interactions for molecular dynamics on a graphics processing unit

MDLab: A molecular dynamics simulation prototyping environment

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Parallel GPU-based data-dependent triangulations

Automatic fitting of spiking neuron models to electrophysiological recordings

High-Throughput All-Atom Molecular Dynamics Simulations Using Distributed Computing

A GPU implementation for LBG and SOM training

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Most viewed papers (last 30 days)