high performance computing on graphics processing units: hgpu.org

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Evolving GeneChip correlation predictors on parallel graphics hardware

William B. Langdon

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Tags: Bioinformatics, Computer science, Genetic programming, nVidia, nVidia GeForce 8800 GTX, OpenGL, Package, RapidMind

January 21, 2011 by hgpu

GP on SPMD parallel graphics hardware for mega Bioinformatics data mining

William B. Langdon, Andrew P. Harrison

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Tags: Computer science, Genetic programming, nVidia, nVidia GeForce 8800 GTX, OpenGL, Package, RapidMind

January 21, 2011 by hgpu

A CUDA SIMT interpreter for genetic programming. Revised

William B. Langdon

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Tags: Computer science, CUDA, Genetic programming, nVidia, Package, Tesla T10P

January 21, 2011 by hgpu

A Many Threaded CUDA Interpreter for Genetic Programming

William B. Langdon

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Tags: Computer science, CUDA, Genetic programming, nVidia, nVidia GeForce GTX 295, Package

January 21, 2011 by hgpu

Large Scale Bioinformatics Data Mining with Parallel Genetic Programming on Graphics Processing Units

William B. Langdon

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Tags: Computer science, Genetic programming, nVidia, nVidia GeForce 8800 GTX, OpenGL, Package, RapidMind

January 21, 2011 by hgpu

Relational query coprocessing on graphics processors

Bingsheng He, Mian Lu, Ke Yang, Rui Fang, Naga K. Govindaraju, Qiong Luo, Pedro V. Sander

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Tags: Algorithms, Computer science, CUDA, Databases, nVidia, nVidia GeForce 8800 GTX, Package, Performance

January 19, 2011 by hgpu

Message passing for GPGPU clusters: CudaMPI

Orion S. Lawlor

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Tags: Computer science, CUDA, GPU cluster, nVidia, nVidia GeForce GTX 280, OpenMPI, Package

January 18, 2011 by hgpu

An exploration of CUDA and CBEA for a gravitational wave data-analysis application (Einstein@Home)

Jens Breitbart, Gaurav Khanna

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Tags: Computational Physics, CUDA, General Relativity and Quantum Cosmology, nVidia, nVidia GeForce GTX 280, Package, Physics

January 18, 2011 by hgpu

Highly accelerated simulations of glassy dynamics using GPUs: caveats on limited floating-point precision

Peter H. Colberg, Felix Hofling

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Tags: Computational Physics, CUDA, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, Package, Physics, Soft Condensed Matter

January 18, 2011 by hgpu

Solving dense linear systems on platforms with multiple hardware accelerators

Enrique S. Quintana-Orti, Francisco D. Igual, Enrique S. Quintana-Orti, Robert A. van de Geijn

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Tags: Computer science, CUDA, GPU cluster, Linear Algebra, nVidia, Package, Task scheduling, Tesla S870

January 17, 2011 by hgpu

Using generalized ensemble simulations and Markov state models to identify conformational states

Gregory R. Bowman, Xuhui Huang, Vijay S. Pande

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Tags: CUDA, Molecular dynamics, Molecular modeling, nVidia, Package, Physics, Thermodynamics

January 16, 2011 by hgpu

Daubechies wavelets for high performance electronic structure calculations: The BigDFT project

Luigi Genovese, Brice Videau, Matthieu Ospici, Thierry Deutsch, Stefan Goedecker, Jean-Francois Mehaut

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Tags: Chemistry, Molecular modeling, OpenCL, Package, Physics

January 16, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Packages

Evolving GeneChip correlation predictors on parallel graphics hardware

GP on SPMD parallel graphics hardware for mega Bioinformatics data mining

A CUDA SIMT interpreter for genetic programming. Revised

A Many Threaded CUDA Interpreter for Genetic Programming

Large Scale Bioinformatics Data Mining with Parallel Genetic Programming on Graphics Processing Units

Relational query coprocessing on graphics processors

Message passing for GPGPU clusters: CudaMPI

An exploration of CUDA and CBEA for a gravitational wave data-analysis application (Einstein@Home)

Highly accelerated simulations of glassy dynamics using GPUs: caveats on limited floating-point precision

Solving dense linear systems on platforms with multiple hardware accelerators

Using generalized ensemble simulations and Markov state models to identify conformational states

Daubechies wavelets for high performance electronic structure calculations: The BigDFT project

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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