high performance computing on graphics processing units: hgpu.org

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Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Package

May 10, 2011 by hgpu

GPULib: GPU Computing in High-Level Languages

Peter Messmer, Paul J. Mullowney, Brian E. Granger

Source codes

Tags: Computer science, CUDA, High-level Languages, nVidia, Package

May 9, 2011 by hgpu

GPU Based Fluid Animation over Elastic Surface Models

Bruno Barcellos S. Coutinho, Gilson Antonio Giraldi, Antonio L. Apolinario Jr.

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Tags: Computer science, Fluid simulation, Games, nVidia, nVidia GeForce 8800 GTX, Package, Real-time graphics, Rendering

May 9, 2011 by hgpu

K-nearest neighbor search: Fast GPU-based implementations and application to high-dimensional feature matching

Vincent Garcia, Eric Debreuve, Frank Nielsen, Michel Barlaud

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Tags: Computer vision, CUBLAS, CUDA, Image processing, Nearest neighbour, nVidia, nVidia Quadro FX 3700 M, Package, SIFT

May 5, 2011 by hgpu

GPU Implementation of Extended Gaussian Mixture Model for Background Subtraction

Vu Pham, Phong Vo, Vu Thanh Hung, Le Hoai Bac

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 9600 GT, Package

May 3, 2011 by hgpu

High-Speed Private Information Retrieval Computation on GPU

Carlos Aguilar Melchor, Benoit Crespin, Philippe Gaborit, Vincent Jolivet, Pierre Rousseau

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Tags: Computer science, CUDA, Information Retrieval, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, nVidia GeForce 8800 Ultra, Package

April 22, 2011 by hgpu

Parallel calculation of the median and order statistics on GPUs with application to robust regression

Gleb Beliakov

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, Numerical Analysis, nVidia, Package, Tesla C2050

April 19, 2011 by hgpu

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware

Weiguo Liu, Bertil Schmidt, Wolfgang Muller-Wittig

Source codes

Tags: Bioinformatics, Biology, BLAST, CUDA, nVidia, nVidia GeForce GTX 295, Package, Sequence alignment

April 18, 2011 by hgpu

CULA: hybrid GPU accelerated linear algebra routines

John R. Humphrey, Daniel K. Price, Kyle E. Spagnoli, Aaron L. Paolini, Eric J. Kelmelis

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Tags: Computer science, CUDA, CULA, Linear Algebra, nVidia, Package, Tesla C1060

April 11, 2011 by hgpu

Exact and complete short read alignment to microbial genomes using GPU programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

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Tags: Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, nVidia GeForce GTX 280, Package

April 11, 2011 by hgpu

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Yongchao Liu, Bertil Schmidt, Douglas Maskell

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Tags: Bioinformatics, Biology, CUDA, MPI, Next-Generation sequencing, nVidia, OpenMP, Package, Tesla S1070

April 11, 2011 by hgpu

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

H. Courtecuisse, J. Allard

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Tags: Algorithms, Computer science, CUDA, Medicine, nVidia, nVidia GeForce GTX 280, Package, Physics-based simulation, Surgical simulation

April 8, 2011 by hgpu

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Towards Efficient and Practical GPU Multitasking in the Era of LLM

Bandicoot: C++ library for GPU accelerated linear algebra

Bandicoot: A Templated C++ Library for GPU Linear Algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

The Fused Kernel Library: A C++ API to Develop Highly-Efficient GPU Libraries

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

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high performance computing on graphics processing units: hgpu.org

Packages

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

GPULib: GPU Computing in High-Level Languages

GPU Based Fluid Animation over Elastic Surface Models

K-nearest neighbor search: Fast GPU-based implementations and application to high-dimensional feature matching

GPU Implementation of Extended Gaussian Mixture Model for Background Subtraction

High-Speed Private Information Retrieval Computation on GPU

Parallel calculation of the median and order statistics on GPUs with application to robust regression

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware

CULA: hybrid GPU accelerated linear algebra routines

Exact and complete short read alignment to microbial genomes using GPU programming

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

Recent source codes

CrossTL: Universal Programming Language & Translator

TBD-GPU

DG-SWEM - The Discontinuous Galerkin Shallow Water Equation Model

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Bandicoot: C++ library for GPU accelerated linear algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

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