high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Shuffle Reduction Based Sparse Matrix-Vector Multiplication on Kepler GPU

Yuan Tao, Huang Zhi-Bin

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Tags: Algorithms, Computer science, CUDA, nVidia, Sparse matrix, Tesla K20

November 10, 2016 by hgpu

PipeCNN: An OpenCL-Based FPGA Accelerator for Large-Scale Convolution Neuron Networks

Dong Wang, Jianjing An, Ke Xu

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Tags: CNN, Computer science, Deep learning, DSP, FPGA, Hardware Architecture, Neural networks, OpenCL, Package

November 10, 2016 by hgpu

Using multiple GPUs to accelerate string searching for digital forensic analysis

Ethan Bayne, R. Ian Ferguson, Adam T. Sampson, John Isaacs

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Tags: Algorithms, Computer science, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 970 M, nVidia GeForce GTX 980, OpenCL, String matching

November 10, 2016 by hgpu

Optimization and parallelization of B-spline based orbital evaluations in QMC on multi/many-core shared memory processors

Amrita Mathuriya, Ye Luo, Anouar Benali, Luke Shulenburger, Jeongnim Kim

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Tags: Computer science, Intel Xeon Phi, QMC

November 10, 2016 by hgpu

Memory layout in GPU implementation of lattice Boltzmann method for sparse 3D geometries

Tadeusz Tomczak, Roman G. Szafran

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Tags: cfd, CUDA, Fluid dynamics, Lattice Boltzmann model, nVidia, nVidia GeForce GTX Titan

November 10, 2016 by hgpu

Balancing locality and concurrency: solving sparse triangular systems on GPUs

Andrea Picciau, Gordon E. Inggs, John Wickerson, Eric C. Kerrigan, George A. Constantinides

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Tags: Algorithms, AMD FirePro W5000, ATI, Computer science, Linear Algebra, nVidia, nVidia Quadro K4000, OpenCL, Sparse matrix

November 8, 2016 by hgpu

Tamp: A Library for Compact Deep Neural Networks with Structured Matrices

Bingchen Gong, Brendan Jou, Felix Yu, Shih-Fu Chang

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Tags: Caffe, Computer science, CUDA, Deep learning, Neural networks, nVidia, Package, TensorFlow

November 8, 2016 by hgpu

Performance Portability of the Aeras Atmosphere Model to Next Generation Architectures using Kokkos

Jerry Watkins, Irina Tezaur

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Tags: CUDA, Earth and Space Sciences, MPI, nVidia, OpenMP, performance portability, Physics, Tesla K20, Tesla K80

November 8, 2016 by hgpu

Accelerate Deep Learning Inference with MCTS in the game of Go on the Intel Xeon Phi

Ching-Nung Lin, Shi-Jim Yen

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Tags: Computer science, Deep learning, Intel Xeon Phi, Neural networks

November 8, 2016 by hgpu

Vispark: GPU-Accelerated Distributed Visual Computing Using Spark

Woohyuk Choi, Sumin Hong, Won-Ki Jeong

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Tags: Clustering, Computer science, CUDA, Distributed computing, DSL, GPU cluster, Image processing, MapReduce, nVidia, nVidia GeForce GTX Titan, Python, Rendering, Spark

November 8, 2016 by hgpu

UNICORN: A Bulk Synchronous Programming Model, Framework and Runtime for Hybrid CPU-GPU Clusters

Tarun Beri

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Tags: Computer science, CUDA, FFT, GPU cluster, Linear Algebra, Matrix multiplication, nVidia, Package, Prefetch, Tesla M2070, Thesis

November 5, 2016 by hgpu

Molecular Activity Prediction using Deep Learning Software Library

Yoshiki Kato, Shinji Hamada, Hitoshi Goto

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Tags: Bioinformatics, Chemistry, Computer science, CUDA, Deep learning, nVidia, Package, Python, Tesla K20

November 5, 2016 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Shuffle Reduction Based Sparse Matrix-Vector Multiplication on Kepler GPU

PipeCNN: An OpenCL-Based FPGA Accelerator for Large-Scale Convolution Neuron Networks

Using multiple GPUs to accelerate string searching for digital forensic analysis

Optimization and parallelization of B-spline based orbital evaluations in QMC on multi/many-core shared memory processors

Memory layout in GPU implementation of lattice Boltzmann method for sparse 3D geometries

Balancing locality and concurrency: solving sparse triangular systems on GPUs

Tamp: A Library for Compact Deep Neural Networks with Structured Matrices

Performance Portability of the Aeras Atmosphere Model to Next Generation Architectures using Kokkos

Accelerate Deep Learning Inference with MCTS in the game of Go on the Intel Xeon Phi

Vispark: GPU-Accelerated Distributed Visual Computing Using Spark

UNICORN: A Bulk Synchronous Programming Model, Framework and Runtime for Hybrid CPU-GPU Clusters

Molecular Activity Prediction using Deep Learning Software Library

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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