high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Sequence alignment, Tesla K20

March 28, 2015 by hgpu

Shortest-Path Queries in Planar Graphs on GPU-Accelerated Architectures

Guillaume Chapuis, Hristo Djidjev

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Tags: Computer science, Data Structures and Algorithms, Distributed computing, Distributed data structures, GPU cluster, nVidia, Path problems, Tesla M2090

March 28, 2015 by hgpu

PErasure: a Parallel Cauchy Reed-Solomon Coding Library for GPUs

Xiaowen Chu, Chengjian Liu, Kai Ouyang, Ling Sing Yung, Hai Liu, Yiu-Wing Leung

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Tags: Computer science, CUDA, Error recovery, nVidia, nVidia GeForce GTX 780

March 28, 2015 by hgpu

Pseudorandom Numbers Generation for Monte Carlo Simulations on GPUs: OpenCL Approach

Vadim Demchik

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Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 6970, Computer science, Monte Carlo simulation, nVidia, nVidia GeForce GTX 560, nVidia GeForce GTX 560 M, nVidia GeForce GTX 780, OpenCL, Package, Pseudo-random number generators, Review, Tesla K40

March 25, 2015 by hgpu

Energy-efficient Computing on Distributed GPUs using Dynamic Parallelism and GPU-controlled Communication

Lena Oden, Benjamin Klenk, Holger Froning

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Tags: Cluster computing, Computer science, CUDA, Distributed computing, Energy-efficient computing, GPU cluster, nVidia, Tesla K20

March 25, 2015 by hgpu

Analysis of illumination conditions at the lunar south pole using parallel computing techniques

Ramiro Marco Figuera

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Tags: Earth and Space Sciences, nVidia, nVidia Quadro FX 1800, OpenCL, Thesis

March 25, 2015 by hgpu

The Feasibility of Using OpenCL Instead of OpenMP for Parallel CPU Programming

Kamran Karimi

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Tags: ATI, Computer science, OpenCL, OpenMP, Performance

March 25, 2015 by hgpu

Data driven scheduling approach for the multi-node multi-GPU Cholesky decomposition

Yuki Tsujita, Toshio Endo

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Tags: Computer science, CUBLAS, CUDA, Heterogeneous systems, Linear Algebra, nVidia, Task scheduling, Tesla K20

March 25, 2015 by hgpu

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

Johannes Koster

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Tags: Algorithms, Bayesian, Bioinformatics, Biology, Filtering, Next-Generation sequencing, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 780, OpenCL, Package, Thesis

March 23, 2015 by hgpu

Curracurrong: a stream processing system for distributed environments

Vasvi Kakkad

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Tags: Algorithms, Computer science, CUDA, OpenCL, Thesis

March 23, 2015 by hgpu

GPU Kernels for High-Speed 4-Bit Astrophysical Data Processing

Peter Klages, Kevin Bandura, Nolan Denman, Andre Recnik, Jonathan Sievers, Keith Vanderlinde

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Tags: AMD Radeon R9 280X, Astrophysics, ATI, Instrumentation and Methods for Astrophysics, OpenCL, Package

March 23, 2015 by hgpu

Massively Parallel Construction of the Cell Graph

Krzysztof Kaczmarski, Pawel Rzazewski, Albert Wolant

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Tags: Algorithms, Computer science, CUDA, nVidia, Robotics, Tesla K40

March 23, 2015 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Applications

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Shortest-Path Queries in Planar Graphs on GPU-Accelerated Architectures

PErasure: a Parallel Cauchy Reed-Solomon Coding Library for GPUs

Pseudorandom Numbers Generation for Monte Carlo Simulations on GPUs: OpenCL Approach

Energy-efficient Computing on Distributed GPUs using Dynamic Parallelism and GPU-controlled Communication

Analysis of illumination conditions at the lunar south pole using parallel computing techniques

The Feasibility of Using OpenCL Instead of OpenMP for Parallel CPU Programming

Data driven scheduling approach for the multi-node multi-GPU Cholesky decomposition

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

Curracurrong: a stream processing system for distributed environments

GPU Kernels for High-Speed 4-Bit Astrophysical Data Processing

Massively Parallel Construction of the Cell Graph

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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