high performance computing on graphics processing units: hgpu.org

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Speeding up the evaluation of evolutionary learning systems using GPGPUs

Maria Franco, Natalio Krasnogor, Jaume Bacardit

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Tags: BioHEL, Evolutionary Computations, LCS, Learning Classifier System, Machine learning, Tesla C1060

November 1, 2012 by mariaux

Efficient Pattern-Based Time Series Classification on GPU

Kai-Wei Chang, Biplab Deka, Wen-Mei W. Hwu, Dan Roth

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 480

October 31, 2012 by hgpu

Parallel Genetic Programming on Graphics Processing Units

Douglas A. Augusto, Heder S. Bernardino, Helio J.C. Barbosa

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Tags: Algorithms, Computer science, Genetic programming, OpenCL, Optimization, Review

October 31, 2012 by hgpu

A Contour-Guided Deformable Image Registration Algorithm for Adaptive Radiotherapy

Xuejun Gu, Bin Dong, Jing Wang, John Yordy, Loren Mell, Xun Jia, Steve B. Jiang

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Tags: Algorithms, CUDA, Image processing, Image registration, nVidia, Radiotherapy, Tesla C1060

October 31, 2012 by hgpu

GPU implementation of a Landau gauge fixing algorithm

Nuno Cardoso, Paulo J. Silva, Orlando Oliveira, Pedro Bicudo

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Tags: CUDA, High Energy Physics - Lattice, nVidia, Physics, Tesla C2070

October 31, 2012 by hgpu

Computational Physics on Graphics Processing Units

Ari Harju, Topi Siro, Filippo Federici-Canova, Samuli Hakala, Teemu Rantalaiho

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Tags: Computational Physics, High Energy Physics - Lattice, Molecular dynamics, Physics, Review

October 31, 2012 by hgpu

Acceleration of Distance-to-Default with GPU

Xin Lou

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Tags: Algorithms, CUDA, Finance, nVidia, nVidia GeForce GTX 460, Thesis

October 30, 2012 by hgpu

Beam Dynamics Simulations Using GPUs

J. Fitzek, S. Appel, O. Boine-Frankenheim

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Tags: CUDA, Data parallelism, MPI, nVidia, Physics, Tesla C2075

October 30, 2012 by hgpu

Impact of GPU Memory Access Patterns on FDTD

Matthew Livesey, James F. Stack Jr., Fumie Costenz, Takeshi Nanri, Norimasa Nakashima, Seiji Fujino

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Tags: Computer science, CUDA, FDTD, Finite-difference time-domain, nVidia, Performance, Tesla M2050

October 30, 2012 by hgpu

GPGPU Implementation of Matrix Formalism for Beam Dynamics Simulation

N. Kulabukhova

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Tags: nVidia, ODEs, Ordinary differential equations, Physics, Tesla S2050

October 30, 2012 by hgpu

Characterization and Exploitation of GPU Memory Systems

Kenneth Sydney Lee

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Tags: AMD Fusion, ATI, ATI Radeon HD 5870, ATI Radeon HD 7970, Computer science, Memory model, nVidia, nVidia GeForce GTX 280, OpenCL, Performance, Tesla C2075, Thesis

October 30, 2012 by hgpu

A GPU Approach to Fortran Legacy Systems

Mariano Mendez, Fernando G. Tinetti

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Tags: Computer science, CUDA, Fortran, nVidia, OpenACC, Programming techniques, Tesla C2075

October 29, 2012 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Speeding up the evaluation of evolutionary learning systems using GPGPUs

Efficient Pattern-Based Time Series Classification on GPU

Parallel Genetic Programming on Graphics Processing Units

A Contour-Guided Deformable Image Registration Algorithm for Adaptive Radiotherapy

GPU implementation of a Landau gauge fixing algorithm

Computational Physics on Graphics Processing Units

Acceleration of Distance-to-Default with GPU

Beam Dynamics Simulations Using GPUs

Impact of GPU Memory Access Patterns on FDTD

GPGPU Implementation of Matrix Formalism for Beam Dynamics Simulation

Characterization and Exploitation of GPU Memory Systems

A GPU Approach to Fortran Legacy Systems

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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