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Systematic Approach in Optimizing Numerical Memory-Bound Kernels on GPU

Ahmad Abdelfattah, David Keyes, Hatem Ltaief

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Tags: Algorithms, Computer science, CUBLAS, CUDA, Linear Algebra, nVidia, Tesla C2070

September 13, 2012 by hgpu

Hotspot Analysis Based Partial CUDA Acceleration of HMMER 3.0 on GPGPUs

Fahian Ahmed, Saddam Quirem, Gak Min, Byeong Kil Lee

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 460, Tesla C1060

September 12, 2012 by hgpu

Fast Determination of the Number of Endmembers for Real-Time Hyperspectral Unmixing on GPUs

Sergio Sanchez, Antonio Plaza

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Tags: CUDA, Image processing, nVidia, nVidia GeForce GTX 580

September 12, 2012 by hgpu

Mapping a Dataflow Programming Model onto Heterogeneous Architectures

Alina Sbirlea

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Tags: Code generation, Computer science, CUDA, Heterogeneous systems, nVidia, nVidia Quadro FX 580, Tesla C1060, Thesis

September 12, 2012 by hgpu

Medusa: Simplified Graph Processing on GPUs

Jianlong Zhong, Bingsheng He

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, Optimization, Performance, Tesla C2050

September 12, 2012 by hgpu

Dynamical heterogeneities as fingerprints of a backbone structure in Potts models

Ezequiel E. Ferrero, Federico Roma, Sebastian Bustingorry, Pablo M. Gleiser

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Tags: Condensed matter, CUDA, Monte Carlo simulation, Numerical simulation, nVidia, nVidia GeForce GTX 480, Package, Physics, Statistical Mechanics

September 12, 2012 by hgpu

A First Step Towards GPU-assisted Query Optimization

Max Heimel, Volker Markl

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Tags: Computer science, Databases, nVidia, nVidia GeForce GTX 460, OpenCL, Optimization, Package

September 11, 2012 by hgpu

Assembly-Free Large-Scale Modal Analysis on the GPU

Praveen Yadav, Krishnan Suresh

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 480, Voxelization

September 11, 2012 by hgpu

Design and Modeling of a Non-blocking Checkpointing System

Kento Sato, Kathryn Mohror, Adam Moody, Naoya Maruyama, Satoshi Matsuoka

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Tags: Computer science, Fault tolerance, GPU cluster, nVidia, Tesla M2050

September 11, 2012 by hgpu

GPU accelerated QTL detection

G. Chapuis, O. Filangi, J.M. Elsen, D. Lavenier, P. Le Roy

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, Package, Tesla C2050

September 11, 2012 by hgpu

High-Performance Location-Aware Publish-Subscribe on GPUs

Gianpaolo Cugola, Alessandro Margara

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 460

September 11, 2012 by hgpu

CuNeuQuant: A CUDA Implementation of the NeuQuant Image Quantization Algorithm

David Bottisti, Liuva Mendez, Damian Dechev

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Tags: Algorithms, Computer vision, CUDA, Image processing, Neural networks, nVidia, nVidia GeForce 9800 GTX, Package

September 10, 2012 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Systematic Approach in Optimizing Numerical Memory-Bound Kernels on GPU

Hotspot Analysis Based Partial CUDA Acceleration of HMMER 3.0 on GPGPUs

Fast Determination of the Number of Endmembers for Real-Time Hyperspectral Unmixing on GPUs

Mapping a Dataflow Programming Model onto Heterogeneous Architectures

Medusa: Simplified Graph Processing on GPUs

Dynamical heterogeneities as fingerprints of a backbone structure in Potts models

A First Step Towards GPU-assisted Query Optimization

Assembly-Free Large-Scale Modal Analysis on the GPU

Design and Modeling of a Non-blocking Checkpointing System

GPU accelerated QTL detection

High-Performance Location-Aware Publish-Subscribe on GPUs

CuNeuQuant: A CUDA Implementation of the NeuQuant Image Quantization Algorithm

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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