high performance computing on graphics processing units: hgpu.org

Packages

hgpu.org » Applications

GPU Accelerated Strong and Branching Bisimilarity Checking

Anton Wijs

View

Download (PDF)

Source codes

Tags: Algorithms, Computer science, CUDA, nVidia, Package, Tesla K20

April 8, 2015 by hgpu

Flexible, Fast and Accurate Sequence Alignment Profiling on GPGPU with PaSWAS

Sven Warris, Feyruz Yalcin, Katherine J. L. Jackson, Jan Peter Nap

View

Download (PDF)

Source codes

Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 295, Package, Sequence alignment, Smith-Waterman algorithm, Tesla C1060

April 7, 2015 by hgpu

The Design and Implementation of a Verification Technique for GPU Kernels

Adam Betts, Nathan Chong, Alastair F. Donaldson, Jeroen Ketema, Shaz Qadeer, Paul Thomson, John Wickerson

View

Download (PDF)

Source codes

Tags: ARM, ATI, ATI Radeon HD 7970, Computer science, CUDA, nVidia, OpenCL, Package, Tesla C2050

April 4, 2015 by hgpu

High Performance Computing for solving large sparse systems. Optical Diffraction Tomography as a case of study

Gloria Ortega Lopez

View

Download (PDF)

Source codes

Tags: Computer science, CUDA, Differential equations, FEM, Finite difference, Finite element method, GPU cluster, Heterogeneous systems, Linear Algebra, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 680, Package, Partial differential equations, PDEs, Sparse matrix, Tesla C2050, Tesla M2070, Tesla M2090, Thesis, Tomography

March 30, 2015 by hgpu

Real-time multi-view deconvolution

Benjamin Schmid, Jan Huisken

View

Download (PDF)

Source codes

Tags: Biology, CUDA, Microscopy, nVidia, nVidia GeForce GTX Titan, Package

March 30, 2015 by hgpu

Loo.py: From Fortran to performance via transformation and substitution rules

Andreas Klockner

View

Download (PDF)

Source codes

Tags: Code generation, Computer science, Fortran, OpenCL, Package, Python

March 28, 2015 by hgpu

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay

View

Download (PDF)

Source codes

Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Sequence alignment, Tesla K20

March 28, 2015 by hgpu

Pseudorandom Numbers Generation for Monte Carlo Simulations on GPUs: OpenCL Approach

Vadim Demchik

View

Download (PDF)

Source codes

Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 6970, Computer science, Monte Carlo simulation, nVidia, nVidia GeForce GTX 560, nVidia GeForce GTX 560 M, nVidia GeForce GTX 780, OpenCL, Package, Pseudo-random number generators, Review, Tesla K40

March 25, 2015 by hgpu

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

Johannes Koster

View

Download (PDF)

Source codes

Tags: Algorithms, Bayesian, Bioinformatics, Biology, Filtering, Next-Generation sequencing, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 780, OpenCL, Package, Thesis

March 23, 2015 by hgpu

GPU Kernels for High-Speed 4-Bit Astrophysical Data Processing

Peter Klages, Kevin Bandura, Nolan Denman, Andre Recnik, Jonathan Sievers, Keith Vanderlinde

View

Download (PDF)

Source codes

Tags: AMD Radeon R9 280X, Astrophysics, ATI, Instrumentation and Methods for Astrophysics, OpenCL, Package

March 23, 2015 by hgpu

CSR5: An Efficient Storage Format for Cross-Platform Sparse Matrix-Vector Multiplication

Weifeng Liu, Brian Vinter

View

Download (PDF)

Source codes

Tags: Algorithms, AMD Radeon R9 290X, Benchmarking, Computer science, CUDA, Intel Xeon Phi, Mathematical Software, nVidia, nVidia GeForce GTX 980, OpenCL, Package, Performance, Sparse matrix

March 20, 2015 by hgpu

Implementation of a Practical Distributed Calculation System with Browsers and JavaScript, and Application to Distributed Deep Learning

Ken Miura, Tatsuya Harada

View

Download (PDF)

Source codes

Tags: Algorithms, Computer science, Java, Machine learning, Neural and Evolutionary Computing, Neural networks, nVidia, nVidia GeForce GTX Titan, OpenCL, Package, WebCL

March 20, 2015 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

Packages

GPU Accelerated Strong and Branching Bisimilarity Checking

Flexible, Fast and Accurate Sequence Alignment Profiling on GPGPU with PaSWAS

The Design and Implementation of a Verification Technique for GPU Kernels

High Performance Computing for solving large sparse systems. Optical Diffraction Tomography as a case of study

Real-time multi-view deconvolution

Loo.py: From Fortran to performance via transformation and substitution rules

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Pseudorandom Numbers Generation for Monte Carlo Simulations on GPUs: OpenCL Approach

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

GPU Kernels for High-Speed 4-Bit Astrophysical Data Processing

CSR5: An Efficient Storage Format for Cross-Platform Sparse Matrix-Vector Multiplication

Implementation of a Practical Distributed Calculation System with Browsers and JavaScript, and Application to Distributed Deep Learning

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Most viewed papers (last 30 days)