high performance computing on graphics processing units: hgpu.org

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The Heisenberg spin glass model on GPU: myths and actual facts

M. Bernaschi, G. Parisi, L. Parisi

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Tags: Condensed matter, CUDA, Disordered Systems and Neural Networks, nVidia, nVidia GeForce GTX 480, Package, Physics, Spin Systems, Tesla C1060, Tesla C2050

October 28, 2010 by hgpu

Analyzing CUDA workloads using a detailed GPU simulator

Ali Bakhoda, George L. Yuan, Wilson W. L. Fung, Henry Wong, Tor M. Aamodt

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Tags: Computer science, CUDA, nVidia, nVidia GeForce 8600 GTS, PTX

October 28, 2010 by hgpu

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

Svetlin Manavski, Giorgio Valle

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Smith-Waterman algorithm

October 28, 2010 by hgpu

cuInspiral: prototype gravitational waves detection pipeline fully coded on GPU using CUDA

Leone B. Bosi

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Tags: Computational Physics, CUDA, FFT, General Relativity and Quantum Cosmology, nVidia, nVidia GeForce GTX 275, Physics

October 28, 2010 by hgpu

GpuCV: A GPU-Accelerated Framework for Image Processing and Computer Vision

Yannick Allusse, Patrick Horain, Ankit Agarwal, Cindula Saipriyadarshan

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Tags: Computer science, Computer vision, CUDA, GLSL, Image processing, nVidia, nVidia GeForce GTX 280, OpenGL, Package

October 28, 2010 by hgpu

Adapting a message-driven parallel application to GPU-accelerated clusters

James C. Phillips, John E. Stone, Klaus Schulten

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Tags: Computer science, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia Quadro FX 5600

October 28, 2010 by hgpu

The gputools package enables GPU computing in R

Joshua Buckner, Justin Wilson, Mark Seligman, Brian Athey, Stanley Watson, Fan Meng

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Tags: Computer science, CUBLAS, CUDA, nVidia, Package

October 28, 2010 by hgpu

Accelerating Large Graph Algorithms on the GPU Using CUDA

Pawan Harish, P. Narayanan

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Tags: Computer science, CUDA, Graph theory, nVidia, nVidia GeForce 8800 GTX

October 28, 2010 by hgpu

Adaptive Mesh Fluid Simulations on GPU

Peng Wang, Tom Abel, Ralf Kaehler

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Tags: Astrophysics, Cosmology and Extragalactic Astrophysics, CUDA, nVidia, nVidia GeForce 8800 GT

October 28, 2010 by hgpu

GPU-accelerated large-scale quantum molecular dynamics simulation of 3-dimensional C60 polymers

Toshiaki Iitaka

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Tags: Computational Physics, CUDA, Materials Science, Molecular dynamics, nVidia, nVidia GeForce 8800 GTX, Physics

October 28, 2010 by hgpu

GAMER: a GPU-Accelerated Adaptive Mesh Refinement Code for Astrophysics

Hsi-Yu Schive, Yu-Chih Tsai, Tzihong Chiueh

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Tags: Astrophysics, Cosmology and Extragalactic Astrophysics, CUDA, GPU cluster, Instrumentation and Methods for Astrophysics, N-body simulation, nVidia

October 28, 2010 by hgpu

High performance cellular level agent-based simulation with FLAME for the GPU

Paul Richmond, Dawn Walker, Simon Coakley, Daniela Romano

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Tags: Bioinformatics, Cellular modelling, Computational modelling, Computer science, CUDA, nVidia, Package

October 28, 2010 by hgpu

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

Experiences with implementing Kokkos’ SYCL backend

ROCm's implementation of Gromacs

GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

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high performance computing on graphics processing units: hgpu.org

Programming

The Heisenberg spin glass model on GPU: myths and actual facts

Analyzing CUDA workloads using a detailed GPU simulator

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

cuInspiral: prototype gravitational waves detection pipeline fully coded on GPU using CUDA

GpuCV: A GPU-Accelerated Framework for Image Processing and Computer Vision

Adapting a message-driven parallel application to GPU-accelerated clusters

The gputools package enables GPU computing in R

Accelerating Large Graph Algorithms on the GPU Using CUDA

Adaptive Mesh Fluid Simulations on GPU

GPU-accelerated large-scale quantum molecular dynamics simulation of 3-dimensional C60 polymers

GAMER: a GPU-Accelerated Adaptive Mesh Refinement Code for Astrophysics

High performance cellular level agent-based simulation with FLAME for the GPU

Recent source codes

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

ROCm's implementation of Gromacs

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

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