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Highly efficient mapping of the Smith-Waterman algorithm on CUDA-compatible GPUs

K. Dohi, K. Benkridt, C. Ling, T. Hamada, Y. Shibata

Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence alignment, Smith-Waterman algorithm

May 31, 2011 by hgpu

Connected component identification and cluster update on GPU

Martin Weigel

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Tags: Computational Physics, CUDA, High Energy Physics - Lattice, Ising model, Monte Carlo simulation, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 580, Physics, Statistical Mechanics, Tesla M2070

May 31, 2011 by hgpu

A Compute Unified System Architecture for Graphics Clusters Incorporating Data Locality

Christoph Muller, Steffen Frey, Magnus Strengert, Carsten Dachsbacher, Thomas Ertl

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Tags: Computer science, CUDA, GPU cluster, nVidia, nVidia GeForce 8800 GT, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, nVidia Quadro FX 5600, Performance

May 30, 2011 by hgpu

Fast Parallel Markov Clustering in Bioinformatics Using Massively Parallel Graphics Processing Unit Computing

Alhadi Bustamam, Kevin Burrage, Nicholas A. Hamilton

Tags: Bioinformatics, Biology, CUDA, MPI, nVidia, Sparse matrix

May 30, 2011 by hgpu

High performance comparison-based sorting algorithm on many-core GPUs

Xiaochun Ye, Dongrui Fan, Wei Lin, Nan Yuan, Paolo Ienne

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 9800 GTX, Performance, Sorting

May 30, 2011 by hgpu

Performance Acceleration of Kernel Polynomial Method Applying Graphics Processing Units

Shixun Zhang, Shinichi Yamagiwa, Masahiko Okumura, Seiji Yunoki

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Tags: Computational Physics, Condensed matter, CUDA, nVidia, Performance, Physics, Tesla C2050

May 30, 2011 by hgpu

GPU-based parallel-beam and cone-beam forward- and backprojection using CUDA

Michael Knaup, Sven Steckmann, Marc Kachelriess

Tags: CUDA, Image processing, Image reconstruction, Medicine, nVidia, Tomography

May 29, 2011 by hgpu

Performance comparison of GPU and FPGA architectures for the SVM training problem

Markos Papadonikolakis, Christos-Savvas Bouganis, George Constantinides

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Tags: Computer science, CUDA, FPGA, Machine learning, nVidia, nVidia GeForce 8500 GT, Performance

May 29, 2011 by hgpu

GPU-Based Ray Tracing of Splats

Rhushabh Goradia, Sriram Kashyap, Parag Chaudhuri, Sharat Chandran

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Tags: 3D Graphics and Realism, Computer science, CUDA, nVidia, nVidia GeForce GTX 275, Raytracing, Rendering

May 29, 2011 by hgpu

Fast GPU-Based CT Reconstruction using the Common Unified Device Architecture (CUDA)

Holger Scherl, Benjamin Keck, Markus Kowarschik, Joachim Hornegger

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Tags: Computed tomography, CT, CUDA, Image processing, Image reconstruction, Medicine, nVidia, nVidia GeForce 8800 GTX, Poster

May 28, 2011 by hgpu

A GPU-based vision system for real time detection of fastening elements in railway inspection

P. De Ruvo, A. Distante, E. Stella, F. Marino

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 8800 Ultra, Pattern recognition

May 28, 2011 by hgpu

Coprocessor Computing with FPGA and GPU

Song Jun Park, Dale R. Shires, Brian J. Henz

Tags: Algorithms, Computer science, CUDA, FPGA, nVidia, Security, Sorting

May 28, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Programming

Highly efficient mapping of the Smith-Waterman algorithm on CUDA-compatible GPUs

Connected component identification and cluster update on GPU

A Compute Unified System Architecture for Graphics Clusters Incorporating Data Locality

Fast Parallel Markov Clustering in Bioinformatics Using Massively Parallel Graphics Processing Unit Computing

High performance comparison-based sorting algorithm on many-core GPUs

Performance Acceleration of Kernel Polynomial Method Applying Graphics Processing Units

GPU-based parallel-beam and cone-beam forward- and backprojection using CUDA

Performance comparison of GPU and FPGA architectures for the SVM training problem

GPU-Based Ray Tracing of Splats

Fast GPU-Based CT Reconstruction using the Common Unified Device Architecture (CUDA)

A GPU-based vision system for real time detection of fastening elements in railway inspection

Coprocessor Computing with FPGA and GPU

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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