high performance computing on graphics processing units: hgpu.org

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hgpu.org » Programming » CUDA

Fast Software AES Encryption

Dag Osvik, Joppe Bos, Deian Stefan, David Canright

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 295, Security

December 17, 2010 by hgpu

A New Parallel Method of Smith-Waterman Algorithm on a Heterogeneous Platform

Bo Chen, Yun Xu, Jiaoyun Yang, Haitao Jiang

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Tags: Biology, CUDA, nVidia, nVidia GeForce 9800 GT, Sequence alignment, Smith-Waterman algorithm

December 17, 2010 by hgpu

Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units

Qianqian Fang, David A. Boas

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, Optics, Package, Physics

December 17, 2010 by hgpu

GPU Accelerated RNA Folding Algorithm

Guillaume Rizk, Dominique Lavenier

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, Tesla C870

December 17, 2010 by hgpu

GPU Parallelization of Algebraic Dynamic Programming

Peter Steffen, Robert Giegerich, Mathieu Giraud

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 280, Package, Presentation, Programming techniques

December 17, 2010 by hgpu

GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues

Nunu Ren, Jimin Liang, Xiaochao Qu, Jianfeng Li, Bingjia Lu, Jie Tian

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce GTX 260, Optics, Package, Physics

December 17, 2010 by hgpu

Programming massively parallel processors : A Hands – on approach

David B Kirk and Wen-Mei W. Hwu

Tags: Algorithms, Book, Computer science, CUDA, nVidia, OpenCL, Review

December 17, 2010 by hgpu

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software

Nathan Schmid, Mathias Botschi, Wilfred F. Van Gunsteren

Tags: Chemistry, Computational chemistry, CUDA, Molecular dynamics, nVidia, nVidia Quadro FX 5800, Solvent effects

December 17, 2010 by hgpu

Accelerating Monte Carlo simulations with an NVIDIA graphics processor

Paul Martinsen, Johannes Blaschke, Rainer Kunnemeyer and Robert Jordan

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, Physics

December 16, 2010 by hgpu

Real-time optical micro-manipulation using optimized holograms generated on the GPU

S. Bianchi, R. Di Leonardo

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Tags: Computer holography, CUDA, nVidia, nVidia GeForce GTX 260, Optics, Physics

December 16, 2010 by hgpu

GPU Acceleration of an Unmodified Parallel Finite Element Navier-Stokes Solver

Dominik Goddeke, Sven H.M. Buijssen, Hilmar Wobker and Stefan Turek

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Tags: CUDA, Finite element method, Fluid dynamics, GPU cluster, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce 8800 GTX

December 16, 2010 by hgpu

Fast and Accurate Finite-Element Multigrid Solvers for PDE Simulations on GPU Clusters

Dominik Goddeke

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Tags: CUDA, Finite element method, Fluid dynamics, GPU cluster, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce 6800, nVidia GeForce 7600 GT, nVidia GeForce 7900 GT, nVidia GeForce 8600 GT, nVidia GeForce 8800 GTX, nVidia GeForce 9600 GT, nVidia GeForce GTX 280, OpenGL, Review, Thesis

December 16, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

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high performance computing on graphics processing units: hgpu.org

Programming

Fast Software AES Encryption

A New Parallel Method of Smith-Waterman Algorithm on a Heterogeneous Platform

Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units

GPU Accelerated RNA Folding Algorithm

GPU Parallelization of Algebraic Dynamic Programming

GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues

Programming massively parallel processors : A Hands – on approach

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software

Accelerating Monte Carlo simulations with an NVIDIA graphics processor

Real-time optical micro-manipulation using optimized holograms generated on the GPU

GPU Acceleration of an Unmodified Parallel Finite Element Navier-Stokes Solver

Fast and Accurate Finite-Element Multigrid Solvers for PDE Simulations on GPU Clusters

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MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

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