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CUDA-MEME: Accelerating Motif Discovery in Biological Sequences Using CUDA-enabled Graphics Processing Units

Yongchao Liu, Bertil Schmidt, Weiguo Liu, Douglas L. Maskell

Tags: Biology, CUDA, nVidia, nVidia GeForce GTX 280, Pattern recognition

November 27, 2010 by hgpu

Performance Analysis of IBM Cell Broadband Engine on Sequence Alignment

Yang Song, Gregory M. Striemer, Ali Akoglu

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Tags: Bioinformatics, Biology, Cell processor, CUDA, nVidia, Sequence alignment, Smith-Waterman algorithm, Tesla C870

November 27, 2010 by hgpu

Molecular dynamics simulation of complex multiphase flow on a computer cluster with GPUs

Feiguo Chen, Wei Ge, Jinghai Li

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Tags: Chemistry, CUDA, GPU cluster, Molecular dynamics, MPI, nVidia, Tesla C870

November 27, 2010 by hgpu

Solving Sparse Linear Systems on NVIDIA Tesla GPUs

Mingliang Wang, Hector Klie, Manish Parashar, Hari Sudan

Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 280, Sparse matrix, Tesla T10P

November 27, 2010 by hgpu

Harnessing graphics processors for the fast computation of acoustic likelihoods in speech recognition

Paul R. Dixon, Tasuku Oonishi, Sadaoki Furui

Tags: Acoustics, CUDA, nVidia, Signal processing, Speech recognition

November 27, 2010 by hgpu

Evaluating the use of GPUs in liver image segmentation and HMMER database searches

J. P. Walters, V. Balu, S. Kompalli, V. Chaudhary

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Tags: CUDA, Image processing, nVidia, nVidia GeForce 8800 GTX

November 26, 2010 by hgpu

Triangular matrix inversion on Graphics Processing Unit

Florian Ries, Tommaso De Marco, Matteo Zivieri, Roberto Guerrieri

Tags: Computer science, CUDA, Linear Algebra, Matrix inversion, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295

November 26, 2010 by hgpu

Fast Disk Encryption through GPGPU Acceleration

Giovanni Agosta, Alessandro Barenghi, Fabrizio D. Santis, Andrea D. Biagio, Gerardo Pelosi

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Source codes

Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 260, Package, Security

November 26, 2010 by hgpu

CFD-based analysis and two-level aerodynamic optimization on Graphics Processing Units

I. C. Kampolis, X. S. Trompoukis, V. G. Asouti, K. C. Giannakoglou

Tags: CUDA, Fluid dynamics, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 285

November 26, 2010 by hgpu

Accelerating leukocyte tracking using CUDA: A case study in leveraging manycore coprocessors

M. Boyer, D. Tarjan, S. T. Acton, K. Skadron

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Tags: Biology, CUDA, Microscopy, nVidia, nVidia GeForce GTX 280

November 26, 2010 by hgpu

A GPU framework for parallel segmentation of volumetric images using discrete deformable models

Jerome Schmid, Jose Iglesias Guitian, Enrico Gobbetti, Nadia Magnenat-Thalmann

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Tags: CUDA, Image processing, MRI, nVidia, nVidia GeForce 8800 GTX, Visualization

November 26, 2010 by hgpu

On the energy efficiency of graphics processing units for scientific computing

S. Huang, S. Xiao, W. Feng

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Tags: Computer science, CUDA, Energy-efficient computing, nVidia, nVidia GeForce GTX 280

November 26, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Programming

CUDA-MEME: Accelerating Motif Discovery in Biological Sequences Using CUDA-enabled Graphics Processing Units

Performance Analysis of IBM Cell Broadband Engine on Sequence Alignment

Molecular dynamics simulation of complex multiphase flow on a computer cluster with GPUs

Solving Sparse Linear Systems on NVIDIA Tesla GPUs

Harnessing graphics processors for the fast computation of acoustic likelihoods in speech recognition

Evaluating the use of GPUs in liver image segmentation and HMMER database searches

Triangular matrix inversion on Graphics Processing Unit

Fast Disk Encryption through GPGPU Acceleration

CFD-based analysis and two-level aerodynamic optimization on Graphics Processing Units

Accelerating leukocyte tracking using CUDA: A case study in leveraging manycore coprocessors

A GPU framework for parallel segmentation of volumetric images using discrete deformable models

On the energy efficiency of graphics processing units for scientific computing

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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