high performance computing on graphics processing units: hgpu.org

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Exploring the Limits of GPUs With Parallel Graph Algorithms

Frank Dehne, Kumanan Yogaratnam

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Tags: Computer science, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce GTX 260, Performance

November 12, 2010 by hgpu

Langevin dynamics simulations of biomolecules on graphics processors

A. Zhmurov, R. I. Dima, Y. Kholodov, V. Barsegov

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Tags: Biological Physics, Biomolecules, Condensed matter, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 295, Physics, Soft Condensed Matter

November 12, 2010 by hgpu

GPGPU based simulations for one and two dimensional quantum walks

Marek Sawerwain, Roman Gielerak

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Tags: Computational Physics, CUDA, nVidia, nVidia GeForce 9600 GT, nVidia GeForce GTX 280, Physics, Quantum walks

November 12, 2010 by hgpu

Enabling a High Throughput Real Time Data Pipeline for a Large Radio Telescope Array with GPUs

R. G. Edgar, M. A. Clark, K. Dale, D. A. Mitchell, S. M. Ord, R. B. Wayth, H. Pfister, L. J. Greenhill

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Tags: Astrophysics, Computational Physics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, Tesla C1060

November 12, 2010 by hgpu

GPU-based ultra-fast direct aperture optimization for online adaptive radiation therapy

Chunhua Men, Xun Jia, Steve. B. Jiang

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Tags: CUDA, Medical Physics, Medicine, nVidia, nVidia GeForce 9500 GT, nVidia GeForce GTX 285, Physics, Radiotherapy, Tesla C1060

November 12, 2010 by hgpu

Real-time volumetric image reconstruction and 3D tumor localization based on a single x-ray projection image for lung cancer radiotherapy

Ruijiang Li, Xun Jia, John H. Lewis, Xuejun Gu, Michael Folkerts, Chunhua Men, Steve B. Jiang

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Tags: CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 12, 2010 by hgpu

Large-Scale DNS of Gas-Solid Flow on Mole-8.5

Qingang Xiong, Guofeng Zhou, Bo Li, Ji Xua, Xiaojian Fang, Junwu Wang, Xianfeng He, Xiaowei Wang, Limin Wang, Wei Ge, Jinghai Li

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Tags: CUDA, Fluid dynamics, Lattice Boltzmann model, nVidia, Physics, Tesla C2050

November 12, 2010 by hgpu

Improved automated lattice perturbation theory in background field gauge

T.C. Hammant, R.R. Horgan, C.J. Monahan, A.G. Hart, E.H. Muller, A. Gray, K. Sivalingham, G.M. von Hippel

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Tags: Computational Physics, CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, Physics, QCD, Tesla C2050

November 12, 2010 by hgpu

Simulation of reaction-diffusion processes in three dimensions using CUDA

Ferenc Molnar Jr., Ferenc Izsak, Robert Meszaros, Istvan Lagzi

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Source codes

Tags: Computational Physics, CUDA, Diffusion equation, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 275, Pattern formation, Physics

November 11, 2010 by hgpu

High-performance astrophysical visualization using Splotch

Zhefan Jin, Mel Krokos, Marzia Rivi, Claudio Gheller, Klaus Dolag, Martin Reinecke

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, MPI, nVidia, nVidia Quadro FX 5600, Visualization

November 11, 2010 by hgpu

Magnetohydrodynamics on Heterogeneous architectures: a performance comparison

Bijia Pang, Ue-li Pen, Michael Perrone

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Tags: Astrophysics, ATI, ATI Radeon HD 5870, Cell processor, Computational Physics, CUDA, Electrodynamics, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce GTX 260, OpenCL, OpenMP, Performance

November 11, 2010 by hgpu

CUDA simulations of active dumbbell suspensions

Victor Putz, Jorn Dunkel, Julia M. Yeomans

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Tags: Condensed matter, CUDA, nVidia, nVidia GeForce GTX 295, Physics, Soft Condensed Matter, Tesla C1060

November 11, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

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high performance computing on graphics processing units: hgpu.org

Programming

Exploring the Limits of GPUs With Parallel Graph Algorithms

Langevin dynamics simulations of biomolecules on graphics processors

GPGPU based simulations for one and two dimensional quantum walks

Enabling a High Throughput Real Time Data Pipeline for a Large Radio Telescope Array with GPUs

GPU-based ultra-fast direct aperture optimization for online adaptive radiation therapy

Real-time volumetric image reconstruction and 3D tumor localization based on a single x-ray projection image for lung cancer radiotherapy

Large-Scale DNS of Gas-Solid Flow on Mole-8.5

Improved automated lattice perturbation theory in background field gauge

Simulation of reaction-diffusion processes in three dimensions using CUDA

High-performance astrophysical visualization using Splotch

Magnetohydrodynamics on Heterogeneous architectures: a performance comparison

CUDA simulations of active dumbbell suspensions

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

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LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

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