high performance computing on graphics processing units: hgpu.org

Digital holographic microscopy (DHM) is a well-known powerful method allowing both the amplitude and phase of a specimen to be simultaneously observed. In order to obtain a reconstructed image from a hologram, numerous calculations for the Fresnel diffraction are required. The Fresnel diffraction can be accelerated by the FFT (Fast Fourier Transform) algorithm. However, real-time […]

GPUs are a class of specialized parallel architectures with tremendous computational power. The new Compute Unified Device Architecture (CUDA) programming model from NVIDIA facilitates programming of general purpose applications on their GPUs. However, manual development of high-performance parallel code for GPUs is still very challenging. In this paper, a number of issues are addressed towards […]

We propose the algorithm to evaluate the Coulomb potential in the ab initio density functional calculation on the graphics processor unit (GPU). The numerical accuracy required for the algorithm is investigated in detail. It is shown that GPU, which supports only the single-precision floating number natively, can take part in the major computational tasks. Because […]

This paper presents a new image-space algorithm for real-time collision detection, where the GPU computes the potentially colliding sets (PCSs), and the CPU performs the standard triangle/triangle intersection test. When the bounding boxes of two objects intersect, the intersection is passed to the GPU. By rendering the objects in the intersection region, the GPU saves […]

Programmable graphics processing units (GPUs) have emerged as excellent computational platforms for certain general-purpose applications. The data parallel execution capabilities of GPUs specifically point to the potential for effective use in simulations of agent-based models (ABM). In this paper, the computational efficiency of ABM simulation on GPUs is evaluated on representative ABM benchmarks. The runtime […]

A similarity join operation A BOWTIE_epsiv B takes two sets of points A, B and a value epsiv isin Ropf, and outputs pairs of points p in A,q in B, such that the distance D(p,q) < epsiv. Similarity joins find use in a variety of fields, such as clustering, text mining, and multimedia databases. A […]

Recent developments in programmable, highly parallel Graphics Processing Units (GPUs) have enabled high performance general purpose computation. We describe a framework designed for high performance GPU programming, built on Nvidia’s Compute Unified Device Architecture (CUDA) platform. The framework is built around the Map Reduce abstraction, which allows application developers to focus on their application, while […]

Graphics processing units (GPUs) originally designed for computer video cards have emerged as the most powerful chip in a high-performance workstation. Unlike multicore CPU architectures, which currently ship with two or four cores, GPU architectures are “manycore” with hundreds of cores capable of running thousands of threads in parallel. NVIDIA’s CUDA is a co-evolved hardware-software […]

In this paper, we present a novel hybrid deformation model using global mass-spring medial representation structures and local finite element model. We employ the hybrid models, by fully calculating the FEM deformation in the local operation part while only calculating the global deformation by medial representation method. To achieve the real-time requirement of realistic deformable […]

This paper presents an algorithm for drawing a sequence of graphs online. The algorithm strives to maintain the global structure of the graph and thus the user’s mental map, while allowing arbitrary modifications between consecutive layouts. The algorithm works online and uses various execution culling methods in order to reduce the layout time and handle […]

The advent of readily available temporal imaging or time series volumetric (4D) imaging has become an indispensable component of treatment planning and adaptive radiotherapy (ART) at many radiotherapy centers. Deformable image registration (DIR) is also used in other areas of medical imaging, including motion corrected image reconstruction. Due to long computation time, clinical applications of […]

Graphical Processing Units (GPUs) have been applied to more types of computations than just graphics processing for several years. Until recently, however, GPU hardware has not been capable of efficiently performing general data processing tasks. With the advent of more general-purpose extensions to GPUs, many more types of computations are now possible. One such computation […]