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Entropy-based High Performance Computation of Boolean SNP-SNP Interactions Using GPUs

Carlos Riveros, Manuel Ujaldon, Moscato Pablo

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 480, Tesla C1060, Tesla C2050

May 12, 2014 by hgpu

Code Optimization and Performance Analysis of Oceanographic Software Package NEMO for GPGPU Systems

Plamenka Borovska, Desislava Ivanova

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Tags: CUDA, Earth and Space Sciences, Heterogeneous systems, nVidia, Tesla M2075

May 12, 2014 by hgpu

Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

You Li, Hao Chi, Leihao Xia, Xiaowen Chu

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Tags: Bioinformatics, Biology, CUDA, GPU cluster, nVidia, nVidia GeForce GTX 580, Spectrometry

May 12, 2014 by hgpu

Dynamic Orchestration of Massively Data Parallel Execution

Mehrzad Samadi

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 560, OpenCL, Performance, Tesla C2050, Thesis

May 10, 2014 by hgpu

A Study of the Parallelization of Hybrid SAT Solver using CUDA

Taeill Yoo, Sangpil Kim, Yongjin Yeom, Jusung Kang

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 660, SAT, Security

May 10, 2014 by hgpu

GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda

Shuang Wang, Jihoon Kim, Xiaoqian Jiang, Stefan F Brunner, Lucila Ohno-Machado

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, RNA, Smith-Waterman algorithm, Tesla M2090

May 10, 2014 by hgpu

3D Objects Tracking by GPGPU-Enhanced Particle Filter Algorithms

Jieyun Zhou, Masayuki Numao, Xiaofeng Li, Haitao Chen

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Tags: Algorithms, Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 9300 M, nVidia GeForce GTX 480, OpenCV, Particle filtering

May 10, 2014 by hgpu

Applying Source Level Auto-Vectorization to Aparapi Java

Frank Curtis Albert

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Tags: Computer science, CUDA, Java, nVidia, nVidia GeForce GTX Titan, OpenCL, Thesis

May 9, 2014 by hgpu

Acceleration of LSB Algorithm in GPU

Darshan R, Prabu R, Divya M

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Tags: Algorithms, Computer science, CUDA, nVidia

May 9, 2014 by hgpu

GPU Implementation of Parallel Support Vector Machine Algorithm with Applications to Detection Intruder

Xueqin Zhang, Yifeng Zhang, Chunhua Gu

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTS 250, Security

May 9, 2014 by hgpu

Understanding Protein Dynamics with L1-Regularized Reversible Hidden Markov Models

Robert T. McGibbon, Bharath Ramsundar, Mohammad M. Sultan, Gert Kiss, Vijay S. Pande

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Tags: Algorithms, Biology, Biophysics, CUDA, Distributed computing, Machine learning, Molecular dynamics, nVidia, nVidia GeForce GTX Titan

May 9, 2014 by hgpu

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

Brice Goglin

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Tags: Computer science, CUDA, GPU cluster, Heterogeneous systems, nVidia, OpenMPI, Package, Xeon Phi

May 7, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Entropy-based High Performance Computation of Boolean SNP-SNP Interactions Using GPUs

Code Optimization and Performance Analysis of Oceanographic Software Package NEMO for GPGPU Systems

Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

Dynamic Orchestration of Massively Data Parallel Execution

A Study of the Parallelization of Hybrid SAT Solver using CUDA

GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda

3D Objects Tracking by GPGPU-Enhanced Particle Filter Algorithms

Applying Source Level Auto-Vectorization to Aparapi Java

Acceleration of LSB Algorithm in GPU

GPU Implementation of Parallel Support Vector Machine Algorithm with Applications to Detection Intruder

Understanding Protein Dynamics with L1-Regularized Reversible Hidden Markov Models

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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