high performance computing on graphics processing units: hgpu.org

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High-Throughput parallel blind Virtual Screening using BINDSURF

Irene Sanchez-Linares, Horacio Perez-Sanchez, Jose M Cecilia, Jose M Garcia

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Tags: Bioinformatics, Biology, CUDA, Databases, nVidia, Tesla C2050

September 15, 2012 by hgpu

Parallelize L-BFGS-B on the GPU

Yun Fei, Wenping Wang, Bin Wang

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Tags: Algorithms, Computer science, CUDA, Nonlinear optimization, nVidia, nVidia GeForce GTX 580, Package, Tessellation, Voronoi diagram

September 14, 2012 by hgpu

Parallel Ray Tracing Simulations with MATLAB for Dynamic Lens Systems

Nicolai Wengert, Dan Negrut

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GT 540 M, nVidia GeForce GTX 480, Raytracing, Tesla C2050

September 14, 2012 by hgpu

On the Validation and Applications of a Parallel Flexible Multi-Body Dynamics Implementation

Daniel J. Melanz

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 480, Tesla C2070, Thesis

September 14, 2012 by hgpu

Accelerating Sparse Matrix Kernels on Graphics Processing Units

Kiran Kumar Matam

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Tags: Algorithms, Computer science, CUDA, Matrix multiplication, nVidia, Sparse matrix, Tesla C1060, Tesla C2050, Thesis

September 14, 2012 by hgpu

Data Sorting Using Graphics Processing Units

Marko J. Misic, Milo V. Tomasevic

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTS 250, Sorting

September 13, 2012 by hgpu

Exploring Heterogeneous Scheduling using the Task-Centric Programming Model

Artur Podobas, Mats Brorsson, Vladimir Vlassov

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia Quadro FX 570, Task scheduling

September 13, 2012 by hgpu

Multi-GPU implementation of the NICAM atmospheric model

Irina Demeshko, Naoya Maruyama, Hirofumi Tomita, Satoshi Matsuoka

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Tags: CUDA, Earth and Space Sciences, Fortran, nVidia, Tesla M2050

September 13, 2012 by hgpu

Systematic Approach in Optimizing Numerical Memory-Bound Kernels on GPU

Ahmad Abdelfattah, David Keyes, Hatem Ltaief

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Tags: Algorithms, Computer science, CUBLAS, CUDA, Linear Algebra, nVidia, Tesla C2070

September 13, 2012 by hgpu

Hotspot Analysis Based Partial CUDA Acceleration of HMMER 3.0 on GPGPUs

Fahian Ahmed, Saddam Quirem, Gak Min, Byeong Kil Lee

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 460, Tesla C1060

September 12, 2012 by hgpu

Fast Determination of the Number of Endmembers for Real-Time Hyperspectral Unmixing on GPUs

Sergio Sanchez, Antonio Plaza

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Tags: CUDA, Image processing, nVidia, nVidia GeForce GTX 580

September 12, 2012 by hgpu

Mapping a Dataflow Programming Model onto Heterogeneous Architectures

Alina Sbirlea

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Tags: Code generation, Computer science, CUDA, Heterogeneous systems, nVidia, nVidia Quadro FX 580, Tesla C1060, Thesis

September 12, 2012 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

High-Throughput parallel blind Virtual Screening using BINDSURF

Parallelize L-BFGS-B on the GPU

Parallel Ray Tracing Simulations with MATLAB for Dynamic Lens Systems

On the Validation and Applications of a Parallel Flexible Multi-Body Dynamics Implementation

Accelerating Sparse Matrix Kernels on Graphics Processing Units

Data Sorting Using Graphics Processing Units

Exploring Heterogeneous Scheduling using the Task-Centric Programming Model

Multi-GPU implementation of the NICAM atmospheric model

Systematic Approach in Optimizing Numerical Memory-Bound Kernels on GPU

Hotspot Analysis Based Partial CUDA Acceleration of HMMER 3.0 on GPGPUs

Fast Determination of the Number of Endmembers for Real-Time Hyperspectral Unmixing on GPUs

Mapping a Dataflow Programming Model onto Heterogeneous Architectures

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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