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Accelerating Protein Sequence Search in a Heterogeneous Computing System

Shucai Xiao, Heshan Lin, Wu-chun Feng

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Tags: Algorithms, Bioinformatics, Biology, BLAST, Databases, Heterogeneous systems, nVidia, Optimization, Tesla C1060, Tesla C2050

November 23, 2011 by hgpu

Building-Blocks for Performance Oriented DSLs

Tiark Rompf, Arvind K. Sujeeth, HyoukJoong Lee, Kevin J. Brown, Hassan Chafi, Martin Odersky, Kunle Olukotun

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Tags: Code generation, Computer science, CUDA, Heterogeneous systems, nVidia, Performance, Programming Languages, Tesla C2050

November 23, 2011 by hgpu

TEG: GPU Performance Estimation Using a Timing Model

Junjie Lai, Andre Seznec

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Tags: Benchmarking, Computer science, CUDA, nVidia, nVidia GeForce GTX 280, Performance

November 23, 2011 by hgpu

An efficient mixed-precision, hybrid CPU-GPU implementation of a fully implicit particle-in-cell algorithm

Guangye Chen, Luis Chacon, Daniel C. Barnes

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Tags: Algorithms, Computational Physics, CUDA, nVidia, nVidia GeForce GTX 580, Optimization, Particle-in-cell methods, Physics, Plasma physics

November 23, 2011 by hgpu

Dynamic adaptation and distribution of binaries to heterogeneous architectures

Espen Angell Kristiansen

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Tags: Computer science, CUDA, Distributed computing, Heterogeneous systems, nVidia, nVidia GeForce GT 220, nVidia GeForce GTX 280, OpenCL, Package, Playstation, Thesis

November 22, 2011 by hgpu

Efficient Shallow Water Simulations on GPUs

Nicholas Moore, Miriam Leeser, Laurie Smith King

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Tags: CUDA, Filtering, Image processing, nVidia, nVidia GeForce GTX 480

November 22, 2011 by hgpu

Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

Konstantin Okonechinkov, German Grekhov, Konstantin Stepanyuk, Mikhail Fursov

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Tags: Algorithms, Bioinformatics, Biology, nVidia, OpenCL, Package, Sequence alignment, Tesla C1060, Tesla C2070

November 22, 2011 by hgpu

Parallelizing Multicore Cache Simulations using Heterogeneous Computing on General Purpose and Graphics Processors

Nikolaos Strikos, Georgios Keramidas, Stefanos Kaxiras

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Tags: Computer science, CUDA, Heterogeneous systems, Memory, nVidia, nVidia GeForce 8800 GTX

November 22, 2011 by hgpu

GPU-based Multi-start Local Search Algorithms

The Van Luong, Nouredine Melab, El-Ghazali Talbi

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Tags: Algorithms, Computer science, CUDA, Metaheuristics, nVidia, nVidia GeForce GTX 280, Optimization, Search

November 22, 2011 by hgpu

Using Graphics Processors for a High Performance Normalization of Gene Expressions

Andres Rodriguez, Oswaldo Trelles, Manuel Ujaldon

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce 9800 GX2

November 22, 2011 by hgpu

Dataflow-Based Implementation of Layered Sensing Applications

Shuvra Bhattacharyya, Chung-Ching Shen, William Plishker, Nimish Sane, Hsiang-Huang Wu, Ruirui Gu

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Tags: CUDA, Flow analysis, nVidia, nVidia GeForce GTX 260, Optimization, Sensing, Signal processing

November 22, 2011 by hgpu

Experiences with Achieving Portability across Heterogeneous Architectures

Lukasz G. Szafaryn, Todd Gamblin, Bronis R. de Supinski, Kevin Skadron

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 460, OpenMP, Performance

November 22, 2011 by hgpu

AutoDock-GPU: AutoDock for GPUs and other accelerators

Architecting Tensor Core-Based Reductions for Irregular Molecular Docking Kernels

NCCLX: collective communication framework

Collective Communication for 100k+ GPUs

Tutoring LLM into a Better CUDA Optimizer

Kernel Library for LLM Serving

Compiler and Runtime Systems for Generative AI Models

Adaptivity in AdaptiveCpp: Optimizing Performance by Leveraging Runtime Information During JIT-Compilation

Neptune: Advanced ML Operator Fusion for Locality and Parallelism on GPUs

Genten: Software for Generalized Tensor Decompositions by Sandia National Laboratories

A Performance Portable Matrix Free Dense MTTKRP in GenTen

Interleaved Learning and Exploration: A Self-Adaptive Fuzz Testing Framework for MLIR

Pinocchio: PINpointing Orbit Crossing Collapsed Hierarchical Objects

Accelerating cosmological simulations on GPUs: a portable approach using OpenMP

KernelCoder: trained on a curated dataset of reasoning traces and CUDA kernel pairs

ConCuR: Conciseness Makes State-of-the-Art Kernel Generation

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high performance computing on graphics processing units: hgpu.org

Accelerating Protein Sequence Search in a Heterogeneous Computing System

Building-Blocks for Performance Oriented DSLs

TEG: GPU Performance Estimation Using a Timing Model

An efficient mixed-precision, hybrid CPU-GPU implementation of a fully implicit particle-in-cell algorithm

Dynamic adaptation and distribution of binaries to heterogeneous architectures

Efficient Shallow Water Simulations on GPUs

Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

Parallelizing Multicore Cache Simulations using Heterogeneous Computing on General Purpose and Graphics Processors

GPU-based Multi-start Local Search Algorithms

Using Graphics Processors for a High Performance Normalization of Gene Expressions

Dataflow-Based Implementation of Layered Sensing Applications

Experiences with Achieving Portability across Heterogeneous Architectures

Recent source codes

AutoDock-GPU: AutoDock for GPUs and other accelerators

NCCLX: collective communication framework

Tutoring LLM into a Better CUDA Optimizer

Kernel Library for LLM Serving

Adaptivity in AdaptiveCpp: Optimizing Performance by Leveraging Runtime Information During JIT-Compilation

Neptune: Advanced ML Operator Fusion for Locality and Parallelism on GPUs

Genten: Software for Generalized Tensor Decompositions by Sandia National Laboratories

Interleaved Learning and Exploration: A Self-Adaptive Fuzz Testing Framework for MLIR

Pinocchio: PINpointing Orbit Crossing Collapsed Hierarchical Objects

KernelCoder: trained on a curated dataset of reasoning traces and CUDA kernel pairs

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