high performance computing on graphics processing units: hgpu.org

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A GPU-based hyperbolic SVD algorithm

Vedran Novakovic, Sanja Singer

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Tags: Computer science, CUDA, Hyperbolic system, Mathematics, MPI, Numerical Analysis, nVidia, nVidia GeForce GTX 275, nVidia GeForce GTX 280, Tesla C1060

November 10, 2010 by hgpu

A GPU implementation of a track-repeating algorithm for proton radiotherapy dose calculations

Pablo P Yepes, Dragan Mirkovic, Phillip J Taddei

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Tags: CUDA, Medical Physics, Medicine, Monte Carlo simulation, Nuclear Experiment, nVidia, nVidia GeForce GTX 295, Physics, Proton radiotherapy

November 10, 2010 by hgpu

GPU-based Iterative Cone Beam CT Reconstruction Using Tight Frame Regularization

Xun Jia, Bin Dong, Yifei Lou, Steve B. Jiang

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Tags: Computed tomography, CUDA, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 10, 2010 by hgpu

Astrophysical Supercomputing with GPUs: Critical Decisions for Early Adopters

Christopher J. Fluke, David G. Barnes, Benjamin R. Barsdell, Amr H. Hassan

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Tags: Astrophysics, ATI, ATI Radeon HD 5970, CUDA, Gravitational lensing, Instrumentation and Methods for Astrophysics, N-body simulation, nVidia, nVidia GeForce 8800 GT, OpenCL, Tesla C1060

November 10, 2010 by hgpu

GPU-based Low-dose 4DCT Reconstruction via Temporal Non-local Means

Zhen Tian, Xun Jia, Steve B. Jiang

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Tags: Computed tomography, CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 10, 2010 by hgpu

Compressive Phase Contrast Tomography

F. R. N. C. Maia, A. MacDowell, S. Marchesini, H. A. Padmore, D. Y. Parkinson, J. Pien, A. Schirotzek, C. Yang

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Tags: CUDA, FFT, nVidia, Optics, Physics, Radon transform, Tesla C1060, Tomography

November 10, 2010 by hgpu

Sop-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors

A. Zhmurov, R. I. Dima, Y. Kholodov, V. Barsegov

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Tags: Bioinformatics, Biomolecular assemblies, Chemistry, CUDA, Dynamic force spectroscopy, Langevin dynamics, Molecular dynamics, nVidia, nVidia GeForce GTX 295

November 9, 2010 by hgpu

GPU-based Low Dose CT Reconstruction via Edge-preserving Total Variation Regularization

Zhen Tian, Xun Jia, Kehong Yuan, Tinsu Pan, Steve B. Jiang

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Tags: Computed tomography, CT, CUBLAS, CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 9, 2010 by hgpu

How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms

Felipe A. Cruz, Simon K. Layton, Lorena A. Barba

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Tags: Computer science, CUDA, Fast summation methods, Mathematical Software, nVidia, Tesla C1060

November 9, 2010 by hgpu

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Christian Trott, Lars Winterfeld

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Source codes

Tags: Computational Physics, Condensed matter, CUDA, GPU cluster, Materials Science, Molecular dynamics, MPI, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Performance, Physics, Tesla C1060, Tesla S1070

November 9, 2010 by hgpu

Improving many flavor QCD simulations using multiple GPUs

M. Hayakawa, K.-I. Ishikawa, Y. Osaki, S. Takeda, S. Uno, N. Yamada

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, OpenMP, Physics, QCD

November 9, 2010 by hgpu

Parallel Sparse Matrix Solver on the GPU Applied to Simulation of Electrical Machines

Antonio Wendell De Oliveira Rodrigues, Frederic Guyomarch, Yvonnick Le Menach, Jean-Luc Dekeyser

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Tags: Computer science, Conjugate gradient solver, CUDA, nVidia, nVidia GeForce GTX 280, Sparse matrix, Tesla C870

November 9, 2010 by hgpu

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

Faial: finds bugs in CUDA kernels

Sound and Partially-Complete Static Analysis of Data-Races in GPU Programs

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

Intel® SHMEM: Device initiated shared memory based communication library

Intel(R) SHMEM: GPU-initiated OpenSHMEM using SYCL

miniLB: Lattice Botlzmann miniapp w/SYCL

miniLB: A Performance Portability Study of Lattice-Boltzmann Simulations

AFOCL

Bitstream Database-Driven FPGA Programming Flow Based on Standard OpenCL

2domination

HPC acceleration of large (min, +) matrix products to compute domination-type parameters in graphs

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high performance computing on graphics processing units: hgpu.org

A GPU-based hyperbolic SVD algorithm

A GPU implementation of a track-repeating algorithm for proton radiotherapy dose calculations

GPU-based Iterative Cone Beam CT Reconstruction Using Tight Frame Regularization

Astrophysical Supercomputing with GPUs: Critical Decisions for Early Adopters

GPU-based Low-dose 4DCT Reconstruction via Temporal Non-local Means

Compressive Phase Contrast Tomography

Sop-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors

GPU-based Low Dose CT Reconstruction via Edge-preserving Total Variation Regularization

How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Improving many flavor QCD simulations using multiple GPUs

Parallel Sparse Matrix Solver on the GPU Applied to Simulation of Electrical Machines

Recent source codes

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

EnergyUCB-Bandit

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

Faial: finds bugs in CUDA kernels

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

Intel® SHMEM: Device initiated shared memory based communication library

miniLB: Lattice Botlzmann miniapp w/SYCL

AFOCL

2domination

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