high performance computing on graphics processing units: hgpu.org

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Compressive Phase Contrast Tomography

F. R. N. C. Maia, A. MacDowell, S. Marchesini, H. A. Padmore, D. Y. Parkinson, J. Pien, A. Schirotzek, C. Yang

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Tags: CUDA, FFT, nVidia, Optics, Physics, Radon transform, Tesla C1060, Tomography

November 10, 2010 by hgpu

Sop-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors

A. Zhmurov, R. I. Dima, Y. Kholodov, V. Barsegov

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Tags: Bioinformatics, Biomolecular assemblies, Chemistry, CUDA, Dynamic force spectroscopy, Langevin dynamics, Molecular dynamics, nVidia, nVidia GeForce GTX 295

November 9, 2010 by hgpu

GPU-based Low Dose CT Reconstruction via Edge-preserving Total Variation Regularization

Zhen Tian, Xun Jia, Kehong Yuan, Tinsu Pan, Steve B. Jiang

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Tags: Computed tomography, CT, CUBLAS, CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 9, 2010 by hgpu

How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms

Felipe A. Cruz, Simon K. Layton, Lorena A. Barba

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Tags: Computer science, CUDA, Fast summation methods, Mathematical Software, nVidia, Tesla C1060

November 9, 2010 by hgpu

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Christian Trott, Lars Winterfeld

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Tags: Computational Physics, Condensed matter, CUDA, GPU cluster, Materials Science, Molecular dynamics, MPI, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Performance, Physics, Tesla C1060, Tesla S1070

November 9, 2010 by hgpu

Improving many flavor QCD simulations using multiple GPUs

M. Hayakawa, K.-I. Ishikawa, Y. Osaki, S. Takeda, S. Uno, N. Yamada

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, OpenMP, Physics, QCD

November 9, 2010 by hgpu

Parallel Sparse Matrix Solver on the GPU Applied to Simulation of Electrical Machines

Antonio Wendell De Oliveira Rodrigues, Frederic Guyomarch, Yvonnick Le Menach, Jean-Luc Dekeyser

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Tags: Computer science, Conjugate gradient solver, CUDA, nVidia, nVidia GeForce GTX 280, Sparse matrix, Tesla C870

November 9, 2010 by hgpu

Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

Hyung-Jin Kim, Weonjong Lee

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Monte Carlo simulation, MPI, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 295, nVidia GeForce GTX 480, Physics, QCD, Tesla C2050

November 9, 2010 by hgpu

SU(2) Lattice QCD Simulations on Fermi GPUs

Nuno Cardoso, Pedro Bicudo

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Tags: Computational Physics, CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 295, nVidia GeForce GTX 480, Package, Physics

November 9, 2010 by hgpu

Implementation of the Neuberger-Dirac operator on GPUs

Bjoern Walk, Hartmut Wittig, Egor Dranischnikow, Elmar Schomer

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Physics, QCD, Tesla C2050

November 9, 2010 by hgpu

Staggered fermions simulations on GPUs

Claudio Bonati, Guido Cossu, Massimo D'Elia, Adriano Di Giacomo

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, Physics, QCD, Tesla C1060, Tesla C2050

November 9, 2010 by hgpu

Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics

Ronald Babich, Michael A. Clark, Balint Joo

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Package, Physics, QCD, Tesla C1060, Tesla C2050, Tesla C870

November 9, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Compressive Phase Contrast Tomography

Sop-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors

GPU-based Low Dose CT Reconstruction via Edge-preserving Total Variation Regularization

How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Improving many flavor QCD simulations using multiple GPUs

Parallel Sparse Matrix Solver on the GPU Applied to Simulation of Electrical Machines

Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

SU(2) Lattice QCD Simulations on Fermi GPUs

Implementation of the Neuberger-Dirac operator on GPUs

Staggered fermions simulations on GPUs

Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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