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Accelerating bioinformatics applications on CUDA-enabled multi-GPU systems

Robin Kobus

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Tags: Bioinformatics, Biology, CUDA, Databases, Hashing, nVidia, nVidia Quadro GV100, Package, Sequence alignment, Tesla P100, Tesla V100, Thesis

November 27, 2023 by hgpu

GPUNet: Searching the Deployable Convolution Neural Networks for GPUs

Linnan Wang, Chenhan Yu, Satish Salian, Slawomir Kierat, Szymon Migacz, Alex Fit Florea

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Tags: Computer science, CUDA, Deep learning, Neural networks, nVidia, nVidia Quadro GV100, Performance, Tesla A100

May 8, 2022 by hgpu

WarpCore: A Library for fast Hash Tables on GPUs

Daniel Jünger, Robin Kobus, André Müller, Christian Hundt, Kai Xu, Weiguo Liu, Bertil Schmidt

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Tags: Bioinformatics, Computer science, CUDA, Hashing, nVidia, nVidia Quadro GV100, Tesla V100

September 20, 2020 by hgpu

Automatic Kernel Generation for Volta Tensor Cores

Somashekaracharya G. Bhaskaracharya, Julien Demouth, Vinod Grover

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Tags: Compilers, Computer science, CUBLAS, CUDA, Deep learning, Matrix multiplication, nVidia, nVidia Quadro GV100, Performance, Programming Languages, PTX

June 28, 2020 by hgpu

AutoMat – Automatic Differentiation for Generalized Standard Materials on GPUs

Johannes Blühdorn, Nicolas R. Gauger, Matthias Kabel

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Tags: Computer science, CUDA, FFT, Mathematical Software, nVidia, nVidia Quadro GV100

June 14, 2020 by hgpu

Fireiron: A Scheduling Language for High-Performance Linear Algebra on GPUs

Bastian Hagedorn, Archibald Samuel Elliott, Henrik Barthels, Rastislav Bodik, Vinod Grover

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Tags: Computer science, CUBLAS, CUDA, Linear Algebra, Matrix multiplication, nVidia, nVidia GeForce GTX 750 Ti, nVidia GeForce RTX 2080 Ti, nVidia Quadro GV100, Programming Languages

March 22, 2020 by hgpu

HashGraph – Scalable Hash Tables Using A Sparse Graph Data Structure

Oded Green

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Tags: Algorithms, Computer science, CUDA, Databases, Graph theory, nVidia, nVidia Quadro GV100

July 14, 2019 by hgpu

Swizzle Inventor: Data Movement Synthesis for GPU Kernels

Phitchaya Mangpo Phothilimthana, Archibald Samuel Elliott, An Wang, Abhinav Jangda, Bastian Hagedorn, Henrik Barthels, Samuel J. Kaufman, Vinod Grover, Emina Torlak, Rastislav Bodik

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Tags: Code generation, Computer science, CUDA, nVidia, nVidia GeForce GTX Titan X, nVidia Quadro GV100

February 3, 2019 by hgpu

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

Kokkidio: Fast, expressive, portable code, based on Kokkos and Eigen

LLaMA-Inference-Bench

LLM-Inference-Bench: Inference Benchmarking of Large Language Models on AI Accelerators

MATAR

On a Simplified Approach to Achieve Parallel Performance and Portability Across CPU and GPU Architectures

Over-synchronization in GPU Programs

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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