high performance computing on graphics processing units: hgpu.org

Applications

kNN Query Processing in Metric Spaces Using GPUs

Ricardo J. Barrientos, Jose I. Gomez, Christian Tenllado, Manuel Prieto Matias, Mauricio Marin

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Tags: Algorithms, Biology, Computational biology, CUDA, Databases, Information Retrieval, nVidia, nVidia GeForce GTX 280

December 4, 2011 by hgpu

On the design of architecture-aware algorithms for emerging applications

Seunghwa Kang

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Tags: Algorithms, Benchmarking, Biology, Cell processor, Computational biology, CUDA, Image processing, MapReduce, nVidia, Package, Tesla C1060, Thesis

December 2, 2011 by hgpu

Parallel-META: A high-performance computational pipeline for metagenomic data analysis

Xiaoquan Su, Jian Xu, Kang Ning

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Tags: Biology, Databases, Genetics, nVidia, Optimization, Tesla C2070

December 2, 2011 by hgpu

Parallelized agent-based simulation on CPU and graphics hardware for spatial and stochastic models in biology

Martin Falk, Michael Ott, Thomas Ertl, Michael Klann, Heinz Koeppl

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Tags: Biology, CUDA, nVidia, nVidia GeForce GTX 465, Programming techniques

November 24, 2011 by hgpu

A Parallel Deconvolution Algorithm in Perfusion Imaging

Fan Zhu, David Rodriguez Gonzalez, Trevor Carpenter, Malcolm Atkinson, Joanna Wardlaw

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Tags: Algorithms, Biology, CUDA, Medicine, nVidia, nVidia GeForce GTX 280, Performance, Tesla C1060

November 23, 2011 by hgpu

Accelerating Protein Sequence Search in a Heterogeneous Computing System

Shucai Xiao, Heshan Lin, Wu-chun Feng

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Tags: Algorithms, Bioinformatics, Biology, BLAST, Databases, Heterogeneous systems, nVidia, Optimization, Tesla C1060, Tesla C2050

November 23, 2011 by hgpu

Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

Konstantin Okonechinkov, German Grekhov, Konstantin Stepanyuk, Mikhail Fursov

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Tags: Algorithms, Bioinformatics, Biology, nVidia, OpenCL, Package, Sequence alignment, Tesla C1060, Tesla C2070

November 22, 2011 by hgpu

Using Graphics Processors for a High Performance Normalization of Gene Expressions

Andres Rodriguez, Oswaldo Trelles, Manuel Ujaldon

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce 9800 GX2

November 22, 2011 by hgpu

Parallel Approach for Longest Common Subsequence problem on GPU

Raik Issaoui, Amine Draief, Abdelfettah Belghith

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GT 430, OpenCL, Sequence matching

November 16, 2011 by hgpu

High-performance Blob-based iterative reconstruction of electron tomography on multi-GPUs

Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu

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Tags: Biology, CUDA, Image reconstruction, nVidia, nVidia GeForce GTX 295, OpenMP, Tomography

November 15, 2011 by hgpu

An Ultrafast Scalable Many-core Motif Discovery Algorithm for Multiple GPUs

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell

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Tags: Algorithms, Benchmarking, Biology, CUDA, GPU cluster, MPI, nVidia, OpenMP, Package, Tesla S2050

November 15, 2011 by hgpu

Advantages and GPU implementation of high-performance indexed DNA search based on suffix arrays

Gustavo Encarnacao, Nuno Sebastiao, Nuno Roma

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 580, Suffix trees

November 13, 2011 by hgpu

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GPJSON: GPU-based JSON data processing system accessible via all GraalVM languages

GPU-based JSON data processing using structural indexes

NEPTUNE: Network- and GPU-aware management of serverless functions at the edge

NEPTUNE: Network- and GPU-aware Management of Serverless Functions at the Edge

HeCBench: a collection of Heterogeneous Computing benchmarks written with CUDA, HIP, SYCL (DPC++), and OpenMP-4.5

Experience of Migrating a Parallel Graph Coloring Program from CUDA to SYCL

cuPSO: GPU Parallelization for Particle Swarm Optimization Algorithms

WARPSPEED: An analytic Data Volume and Performance Estimator for GPU Kernels

Analytical Performance Estimation during Code Generation on Modern GPUs

Celerity HLA: A high-level API on top of Celerity to support functional, C++20 range-adaptors-like patterns

The Celerity High-level API: C++20 for Accelerator Clusters

GPU-Sched

CASE: A Compiler-Assisted SchEduling Framework for Multi-GPU Systems

Efficient Execution of OpenMP on GPUs

Explicit Caching HYB based SpMV

Explicit caching HYB: a new high-performance SpMV framework on GPGPU

matrix_inversion algorithm

Performance study on GPU offloading techniques using the Gauss matrix inverse algorithm

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

kNN Query Processing in Metric Spaces Using GPUs

On the design of architecture-aware algorithms for emerging applications

Parallel-META: A high-performance computational pipeline for metagenomic data analysis

Parallelized agent-based simulation on CPU and graphics hardware for spatial and stochastic models in biology

A Parallel Deconvolution Algorithm in Perfusion Imaging

Accelerating Protein Sequence Search in a Heterogeneous Computing System

Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

Using Graphics Processors for a High Performance Normalization of Gene Expressions

Parallel Approach for Longest Common Subsequence problem on GPU

High-performance Blob-based iterative reconstruction of electron tomography on multi-GPUs

An Ultrafast Scalable Many-core Motif Discovery Algorithm for Multiple GPUs

Advantages and GPU implementation of high-performance indexed DNA search based on suffix arrays

Recent source codes

GPJSON: GPU-based JSON data processing system accessible via all GraalVM languages

NEPTUNE: Network- and GPU-aware management of serverless functions at the edge

HeCBench: a collection of Heterogeneous Computing benchmarks written with CUDA, HIP, SYCL (DPC++), and OpenMP-4.5

cuPSO: GPU Parallelization for Particle Swarm Optimization Algorithms

WARPSPEED: An analytic Data Volume and Performance Estimator for GPU Kernels

Celerity HLA: A high-level API on top of Celerity to support functional, C++20 range-adaptors-like patterns

GPU-Sched

Efficient Execution of OpenMP on GPUs

Explicit Caching HYB based SpMV

matrix_inversion algorithm

Most viewed papers (last 30 days)