high performance computing on graphics processing units: hgpu.org

Jeongnim Kim, Andrew Baczewski, Todd D. Beaudet, Anouar Benali, M. Chandler Bennett, Mark A. Berrill, Nick S. Blunt, Michele Casula, David M. Ceperley, Simone Chiesa, Bryan K. Clark, Raymond C. Clay III, Kris T. Delaney, Mark Dewing, Kenneth P. Esler, Hongxia Hao, Olle Heinonen, Paul R. C. Kent, Jaron T. Krogel, Ilkka Kylanpaa, Ying Wai Li, M. Graham Lopez, Ye Luo, Richard M. Martin, Amrita Mathuriya, Jeremy McMinis, Cody A. Melton, Lubos Mitas, Miguel A. Morales, Eric Neuscamman, William D. Parker, Sergio D. Pineda Flores, Nichols A. Romero, Brenda M. Rubenstein, Jacqueline A. R. Shea, Hyeondeok Shin, Luke Shulenburger, Andreas Tillack, Joshua P. Townsend, Norm M. Tubman, Brett Van Der Goetz, Jordan E. Vincent, Yubo Yang, Shuai Zhang, Luning Zhao

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Tags: Algorithms, Chemical Physics, Computational Physics, CUDA, nVidia, Package, Physics, QMC

March 3, 2018 by hgpu

GAMER-2: a GPU-accelerated adaptive mesh refinement code — accuracy, performance, and scalability

Hsi-Yu Schive, John A. ZuHone, Nathan J. Goldbaum, Matthew J. Turk, Massimo Gaspari, Chin-Yu Cheng

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Tags: ARM, Astrophysics, Chemistry, CUDA, Instrumentation and Methods for Astrophysics, Magnetohydrodynamics, MPI, nVidia, OpenMP, Package, Tesla K20, Tesla P100

December 24, 2017 by hgpu

Molecular dynamics recipes for genome research

Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo Luigi Vescovi, Tommaso Mazza

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Tags: Benchmarking, Bioinformatics, Biology, Chemistry, CUDA, Genomics, Molecular dynamics, nVidia, OpenCL, Physics, Tesla C2070

December 19, 2017 by hgpu

Practical Implementation of Lattice QCD Simulation on Intel Xeon Phi Knights Landing

Issaku Kanamori, Hideo Matsufuru

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Tags: Computational Physics, High Energy Physics - Lattice, Intel Xeon Phi, Numerical simulation, Physics, QCD

December 7, 2017 by hgpu

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high performance computing on graphics processing units: hgpu.org

Applications

Ray-traced Radiative Transfer on Massively Threaded Architectures

AVX-512 extension to OpenQCD 1.6

Combining Multiple Optimised FPGA-based Pulsar Search Modules Using OpenCL

FPGA-based Acceleration of FT Convolution for Pulsar Search Using OpenCL

Fast inference of deep neural networks in FPGAs for particle physics

A development of an accelerator board dedicated for multi-precision arithmetic operations and its application to Feynman loop integrals II

MALBEC: a new CUDA-C ray-tracer in General Relativity

Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs

QMCPACK: An open source ab initio Quantum Monte Carlo package for the electronic structure of atoms, molecules, and solids

GAMER-2: a GPU-accelerated adaptive mesh refinement code — accuracy, performance, and scalability

Molecular dynamics recipes for genome research

Practical Implementation of Lattice QCD Simulation on Intel Xeon Phi Knights Landing

Recent source codes

Rodinia Benchmarks for DPC++

DCA++: a state of the art implementation of the dynamical cluster approximation

tntorch - Tensor Network Learning with PyTorch

Open-source FPGA-ML codesign for the MLPerf Tiny Benchmark

MapReduce for Counting Word Frequencies with MPI and GPUs

CoDL: Efficient CPU-GPU Co-execution for Deep Learning Inference on Mobile Devices

SYCLCOMP Utilities

M1 GPUs for (scientific) computations in C++

CUB: Cooperative primitives for CUDA C++

Simulator and workload generator for Edge-to-Cloud environments

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