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Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, Heterogeneous systems, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, OpenCL, Sequence alignment, SYCL, Tesla V100

November 27, 2022 by hgpu

Towards Understanding and Mitigating Memory-Access Challenges in Computing Systems

Mohammad K. Dashti

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Tags: Computer science, CUDA, Deep learning, Heterogeneous systems, Memory model, nVidia, nVidia GeForce RTX 2070, nVidia Jetson TK1, OpenCL, Package, Thesis

August 28, 2022 by hgpu

The Celerity High-level API: C++20 for Accelerator Clusters

Peter Thoman, Florian Tischler, Philip Salzmann, Thomas Fahringer

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Tags: Code generation, Computer science, Data parallelism, MPI, nVidia, nVidia GeForce RTX 2070, Package, Programming techniques, SYCL

May 1, 2022 by hgpu

Migrating CUDA to oneAPI: A Smith-Waterman Case Study

Manuel Costanzo, Enzo Rucci, Carlos Garcia Sanchez, Marcelo Naiouf, Manuel Prieto-Matias

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Tags: Bioinformatics, Biology, CUDA, FPGA, Heterogeneous systems, nVidia, nVidia GeForce GTX Titan X, nVidia GeForce RTX 2070, Sequence alignment, Smith-Waterman algorithm, SYCL

March 27, 2022 by hgpu

High-Performance Interactive Scientific Visualization With Datoviz via the Vulkan Low-Level GPU API

Cyrille Rossant, Nicolas Rougier

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Tags: Computer science, nVidia, nVidia GeForce RTX 2070, Package, Python, Rendering, Visualization, Vulkan

December 26, 2021 by hgpu

Fast Neural Representations for Direct Volume Rendering

Sebastian Weiss, Philipp Hermüller, Rüdiger Westermann

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Tags: 3D Graphics and Realism, CUDA, GLSL, nVidia, nVidia GeForce RTX 2070, Package, Raytracing, Rendering, Visualization

December 12, 2021 by hgpu

Analysis and Comparison of Performance and Power Consumption of Neural Networks on CPU, GPU, TPU and FPGA

Christopher Noel Hesse

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Tags: Benchmarking, Computer science, Deep learning, FPGA, Neural networks, nVidia, nVidia DGX-1, nVidia GeForce RTX 2070, nVidia Jetson Nano, Performance, Tesla V100

December 5, 2021 by hgpu

Bayesian Optimization for auto-tuning GPU kernels

Floris-Jan Willemsen, Rob van Nieuwpoort, Ben van Werkhoven

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Tags: Bayesian, Computer science, CUDA, Machine learning, nVidia, nVidia A100, nVidia GeForce GTX Titan X, nVidia GeForce RTX 2070, OpenCL, Package, Performance

December 5, 2021 by hgpu

Programming Heterogeneous Systems with General and Domain-Specific Frameworks

Lukas Sommer

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Tags: Computer science, CUDA, FPGA, Heterogeneous systems, Machine learning, nVidia, nVidia GeForce RTX 2070, OpenCL, OpenMP, Package, Python, Thesis

November 21, 2021 by hgpu

Collage: Automated Integration of Deep Learning Backends

Byungsoo Jeon, Sunghyun Park, Peiyuan Liao, Sheng Xu, Tianqi Chen, Zhihao Jia

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Tags: Computer science, CUDA, Deep learning, Machine learning, nVidia, nVidia GeForce RTX 2070, Tesla V100

November 7, 2021 by hgpu

ndzip-gpu: Efficient Lossless Compression of Scientific Floating-Point Data on GPUs

Fabian Knorr, Peter Thoman, Thomas Fahringer

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Tags: Compression, Computer science, CUDA, nVidia, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, Package, SYCL, Tesla V100

August 8, 2021 by hgpu

Lettuce: PyTorch-based Lattice Boltzmann Framework

Mario Christopher Bedrunka, Dominik Wilde, Martin Kliemank, Dirk Reith, Holger Foysi, Andreas Krämer

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Tags: Algorithms, Computational Physics, CUDA, Deep learning, Fluid dynamics, Lattice Boltzmann model, Machine learning, nVidia, nVidia GeForce RTX 2070, Package, Physics, Tesla V100

June 27, 2021 by hgpu

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FDAS: Fourier Domain Acceleration Search, FPGA-accelerated with OpenCL

Pulsar search acceleration using FPGAs and OpenCL templates

Implementation of a motion estimation algorithm for Intel FPGAs using OpenCL

Reeber: a library for shared- and distributed-memory parallel computation of merge trees

Fast Merge Tree Computation via SYCL

pocl: Portable Computing Language

Efficient OpenCL system integration of non-blocking FPGA accelerators

OneFlow: a deep learning framework designed to be user-friendly, scalable and efficient

AutoDDL: Automatic Distributed Deep Learning with Asymptotically Optimal Communication

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high performance computing on graphics processing units: hgpu.org

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Towards Understanding and Mitigating Memory-Access Challenges in Computing Systems

The Celerity High-level API: C++20 for Accelerator Clusters

Migrating CUDA to oneAPI: A Smith-Waterman Case Study

High-Performance Interactive Scientific Visualization With Datoviz via the Vulkan Low-Level GPU API

Fast Neural Representations for Direct Volume Rendering

Analysis and Comparison of Performance and Power Consumption of Neural Networks on CPU, GPU, TPU and FPGA

Bayesian Optimization for auto-tuning GPU kernels

Programming Heterogeneous Systems with General and Domain-Specific Frameworks

Collage: Automated Integration of Deep Learning Backends

ndzip-gpu: Efficient Lossless Compression of Scientific Floating-Point Data on GPUs

Lettuce: PyTorch-based Lattice Boltzmann Framework

Recent source codes

FDAS: Fourier Domain Acceleration Search, FPGA-accelerated with OpenCL

Implementation of a motion estimation algorithm for Intel FPGAs using OpenCL

Reeber: a library for shared- and distributed-memory parallel computation of merge trees

pocl: Portable Computing Language

OneFlow: a deep learning framework designed to be user-friendly, scalable and efficient

Python Suite for Advanced General Ensemble Simulations

GPU load-balancing library for regular and irregular computations

Shine compiler for the RISE language

Cramming the training of a (BERT-type) language model into limited compute

oneDNN: oneAPI Deep Neural Network Library

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