high performance computing on graphics processing units: hgpu.org

hgpu.org » paper

Sop-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors

A. Zhmurov, R. I. Dima, Y. Kholodov, V. Barsegov

View

Tags: Bioinformatics, Biomolecular assemblies, Chemistry, CUDA, Dynamic force spectroscopy, Langevin dynamics, Molecular dynamics, nVidia, nVidia GeForce GTX 295

November 9, 2010 by hgpu

GPU-based Low Dose CT Reconstruction via Edge-preserving Total Variation Regularization

Zhen Tian, Xun Jia, Kehong Yuan, Tinsu Pan, Steve B. Jiang

View

Download (PDF)

Tags: Computed tomography, CT, CUBLAS, CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 9, 2010 by hgpu

How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms

Felipe A. Cruz, Simon K. Layton, Lorena A. Barba

View

Download (PDF)

Tags: Computer science, CUDA, Fast summation methods, Mathematical Software, nVidia, Tesla C1060

November 9, 2010 by hgpu

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Christian Trott, Lars Winterfeld

View

Download (PDF)

Source codes

Tags: Computational Physics, Condensed matter, CUDA, GPU cluster, Materials Science, Molecular dynamics, MPI, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Performance, Physics, Tesla C1060, Tesla S1070

November 9, 2010 by hgpu

Improving many flavor QCD simulations using multiple GPUs

M. Hayakawa, K.-I. Ishikawa, Y. Osaki, S. Takeda, S. Uno, N. Yamada

View

Download (PDF)

Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, OpenMP, Physics, QCD

November 9, 2010 by hgpu

Direct N-body simulations of globular clusters: (I) Palomar 14

Akram Hasani Zonoozi, Andreas H.W. Kuepper, Holger Baumgardt, Hosein Haghi, Pavel Kroupa, Michael Hilker

View

Download (PDF)

Tags: Astrophysics, Galaxy Astrophysics, Globular clusters, GPU cluster, N-body simulation, nVidia, nVidia GeForce GTX 280

November 9, 2010 by hgpu

An Exploration of OpenCL for a Numerical Relativity Application

Niket K. Choudhary, Rakesh Ginjupalli, Sandeep Navada, Gaurav Khanna

View

Download (PDF)

Tags: Astrophysics, ATI, ATI Radeon HD 5870, Computational Physics, General Relativity and Quantum Cosmology, nVidia, OpenCL, OpenMP, Tesla C2050

November 9, 2010 by hgpu

Parallel Sparse Matrix Solver on the GPU Applied to Simulation of Electrical Machines

Antonio Wendell De Oliveira Rodrigues, Frederic Guyomarch, Yvonnick Le Menach, Jean-Luc Dekeyser

View

Download (PDF)

Tags: Computer science, Conjugate gradient solver, CUDA, nVidia, nVidia GeForce GTX 280, Sparse matrix, Tesla C870

November 9, 2010 by hgpu

Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

Hyung-Jin Kim, Weonjong Lee

View

Download (PDF)

Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Monte Carlo simulation, MPI, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 295, nVidia GeForce GTX 480, Physics, QCD, Tesla C2050

November 9, 2010 by hgpu

SU(2) Lattice QCD Simulations on Fermi GPUs

Nuno Cardoso, Pedro Bicudo

View

Download (PDF)

Source codes

Tags: Computational Physics, CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 295, nVidia GeForce GTX 480, Package, Physics

November 9, 2010 by hgpu

Implementation of the Neuberger-Dirac operator on GPUs

Bjoern Walk, Hartmut Wittig, Egor Dranischnikow, Elmar Schomer

View

Download (PDF)

Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Physics, QCD, Tesla C2050

November 9, 2010 by hgpu

Staggered fermions simulations on GPUs

Claudio Bonati, Guido Cossu, Massimo D'Elia, Adriano Di Giacomo

View

Download (PDF)

Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, Physics, QCD, Tesla C1060, Tesla C2050

November 9, 2010 by hgpu

Specx: Speculative task-based runtime system

Specx: a C++ task-based runtime system for heterogeneous distributed architectures

Mutual-Supervised Learning for Sequential-to-Parallel Code Translation

KISim: Kubernetes Intelligent Scheduling Simulator

KIS-S: A GPU-Aware Kubernetes Inference Simulator with RL-Based Auto-Scaling

Hardware Compute Partitioning on NVIDIA GPUs for Composable Systems

Efficient GPU Implementation of Multi-Precision Integer Division

ParEval: A Parallel Code Evaluation Benchmark

ParEval-Repo: A Benchmark Suite for Evaluating LLMs with Repository-level HPC Translation Tasks

FlashSparse: Minimizing Computation Redundancy for Fast Sparse Matrix Multiplications on Tensor Cores

Libra: Synergizing CUDA and Tensor Cores for High-Performance Sparse Matrix Multiplication

exa-AMD: Exascale Accelerated Materials Discovery

Accelerated discovery and design of Fe-Co-Zr magnets with tunable magnetic anisotropy through machine learning and parallel computing

WiLLM: An Open Wireless LLM Communication System

Vcc: the Vulkan Clang Compiler

No More Shading Languages: Compiling C++ to Vulkan Shaders

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

Applications

Sop-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors

GPU-based Low Dose CT Reconstruction via Edge-preserving Total Variation Regularization

How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Improving many flavor QCD simulations using multiple GPUs

Direct N-body simulations of globular clusters: (I) Palomar 14

An Exploration of OpenCL for a Numerical Relativity Application

Parallel Sparse Matrix Solver on the GPU Applied to Simulation of Electrical Machines

Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

SU(2) Lattice QCD Simulations on Fermi GPUs

Implementation of the Neuberger-Dirac operator on GPUs

Staggered fermions simulations on GPUs

Recent source codes

Specx: Speculative task-based runtime system

Mutual-Supervised Learning for Sequential-to-Parallel Code Translation

KISim: Kubernetes Intelligent Scheduling Simulator

Hardware Compute Partitioning on NVIDIA GPUs for Composable Systems

Efficient GPU Implementation of Multi-Precision Integer Division

ParEval: A Parallel Code Evaluation Benchmark

FlashSparse: Minimizing Computation Redundancy for Fast Sparse Matrix Multiplications on Tensor Cores

exa-AMD: Exascale Accelerated Materials Discovery

WiLLM: An Open Wireless LLM Communication System

Vcc: the Vulkan Clang Compiler

Most viewed papers (last 30 days)