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CUSA and CUDE: GPU-accelerated methods for estimating solvent accessible surface area and desolvation

David Dynerman, Erick Butzlaff, Julie C. Mitchell

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Tags: Bioinformatics, Biology, Biophysics, Chemistry, Computational biology, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Solvent effects

October 29, 2010 by hgpu

Performance study of interference on GPU and CPU resources with multiple applications

Shinichi Yamagiwa, Koichi Wada

Tags: Algorithm optimization, Computer science, Performance

October 29, 2010 by hgpu

Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach

Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried Hofinger

Tags: ASIC, Chemistry, Computational chemistry, MDGRAPE, Poisson Boltzmann, Solvent effects

October 29, 2010 by hgpu

GPU-based image manipulation and enhancement techniques for dynamic volumetric medical image visualization

Qi Zhang, R. Eagleson, T. M. Peters

Tags: Image processing, Medicine, Visualization

October 29, 2010 by hgpu

An analytical model for a GPU architecture with memory-level and thread-level parallelism awareness

Sunpyo Hong, Hyesoon Kim

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Tags: Analytical model, Computer science, CUDA, Memory level parallelism, nVidia, nVidia GeForce 8800 GT, nVidia GeForce 8800 GTX, nVidia Quadro FX 5600, Warp level parallelism

October 29, 2010 by hgpu

GPU-based Video Feature Tracking and Matching

Sudipta N. Sinha, Jan-michael Frahm, Marc Pollefeys, Yakup Genc

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Tags: Computer science, Image processing, nVidia, nVidia GeForce 7900 GTX, OpenGL, Package, SIFT

October 29, 2010 by hgpu

GPU acceleration of cutoff pair potentials for molecular modeling applications

Christopher I. Rodrigues, David J. Hardy, John E. Stone, Klaus Schulten, Wen Mei

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Tags: Algorithms, Biology, Chemistry, CUDA, Medicine, Molecular dynamics, nVidia, Tesla C870

October 28, 2010 by hgpu

Real-time eye blink detection with GPU-based SIFT tracking

Marc Lalonde, David Byrns, Langis Gagnon, Normand Teasdale, Denis Laurendeau

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Tags: Computer science, Image processing, SIFT

October 28, 2010 by hgpu

AUTO-GC: Automatic translation of data mining applications to GPU clusters

Wenjing Ma, Gagan Agrawal

Tags: Code generation, Computer science, CUDA, GPU cluster, nVidia

October 28, 2010 by hgpu

GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration

G. C. Sharp, N. Kandasamy, H. Singh, M. Folkert

Tags: Brook, Computed radiography, Computer science, Image processing, Medicine, nVidia, nVidia GeForce 8800 GTX

October 28, 2010 by hgpu

GPU Gems: Programming Techniques, Tips and Tricks for Real-Time Graphics

Randima Fernando

Tags: 3D Graphics and Realism, Book, Computer science, Raytracing, Rendering

October 28, 2010 by hgpu

CUDA cuts: Fast graph cuts on the GPU

Vibhav Vineet, P. J. Narayanan

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Tags: Computer science, CUDA, Image processing, nVidia, nVidia GeForce 8800 GTX

October 28, 2010 by hgpu

CuPBoP-AMD: Extending CUDA to AMD Platforms

CuPBoP: Making CUDA a Portable Language

Adopter: Automated Deep Learning Optimization via DSL-based Source Code Transformation

Automated Deep Learning Optimization via DSL-Based Source Code Transformation

ROCm's implementation of Gromacs

GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

Experiences with implementing Kokkos’ SYCL backend

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

CUSA and CUDE: GPU-accelerated methods for estimating solvent accessible surface area and desolvation

Performance study of interference on GPU and CPU resources with multiple applications

Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach

GPU-based image manipulation and enhancement techniques for dynamic volumetric medical image visualization

An analytical model for a GPU architecture with memory-level and thread-level parallelism awareness

GPU-based Video Feature Tracking and Matching

GPU acceleration of cutoff pair potentials for molecular modeling applications

Real-time eye blink detection with GPU-based SIFT tracking

AUTO-GC: Automatic translation of data mining applications to GPU clusters

GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration

GPU Gems: Programming Techniques, Tips and Tricks for Real-Time Graphics

CUDA cuts: Fast graph cuts on the GPU

Recent source codes

CuPBoP-AMD: Extending CUDA to AMD Platforms

Adopter: Automated Deep Learning Optimization via DSL-based Source Code Transformation

ROCm's implementation of Gromacs

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

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