high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications » Medicine

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

Ye Fang, Yun Ding, Wei P. Feinstein, David M. Koppelman, Juana Moreno, Mark Jarrell, J. Ramanujam, Michal Brylinski

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Tags: Algorithms, Chemistry, CUDA, Heterogeneous systems, Intel Xeon Phi, Medicine, Molecular dynamics, nVidia, nVidia GeForce GTX 980, OpenMP, Package

July 16, 2016 by hgpu

Graphics Supercomputing Applied to Brain Image Analysis with NiftyReg

Francisco Nurudin Alvarez Gonzalez

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Tags: CUDA, Image processing, Image registration, Medicine, nVidia, nVidia GeForce GTX 980, Thesis

May 23, 2016 by hgpu

Parallel Multi-Dimensional LSTM, With Application to Fast Biomedical Volumetric Image Segmentation

Marijn F. Stollenga, Wonmin Byeon, Marcus Liwicki, Juergen Schmidhuber

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Tags: Computer science, CUDA, Deep learning, Image processing, Medicine, Neural networks, nVidia, nVidia GeForce GTX Titan X

June 26, 2015 by hgpu

Parallelization of DIRA and CTmod using OpenMP and OpenCL

Alexander Ortenberg

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Tags: AMD Radeon R7 260, ATI, Computed tomography, CT, Image processing, Image reconstruction, Intel Xeon Phi, Medicine, OpenCL, OpenMP, Thesis, Tomography

June 16, 2015 by hgpu

U-Net: Convolutional Networks for Biomedical Image Segmentation

Olaf Ronneberger, Philipp Fischer, Thomas Brox

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Tags: CNN, Computer science, CUDA, Deep learning, Image processing, Medicine, Microscopy, Neural networks, nVidia, nVidia GeForce GTX Titan, Package

May 20, 2015 by hgpu

A Study of Scheduling a Neuro-imaging Application On a Heterogeneous CPU-GPU Cluster

Reza Nakhjavani

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Tags: Algorithms, CUDA, GPU cluster, Heterogeneous systems, Image processing, Medicine, nVidia, nVidia GeForce GTX Titan, PC cluster, Thesis

April 25, 2015 by hgpu

Deep convolutional networks for pancreas segmentation in CT imaging

Holger R. Roth, Amal Farag, Le Lu, Evrim B. Turkbey, Ronald M. Summers

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Tags: Computed tomography, CT, CUDA, Deep learning, Medicine, Neural networks, nVidia, nVidia GeForce GTX Titan Z, Tomography

April 17, 2015 by hgpu

A fast marching method based back projection algorithm for photoacoustic tomography in heterogeneous media

Tianren Wang, Yun Jing

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Tags: CUDA, Heterogeneous systems, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C2075, Tomography

January 19, 2015 by hgpu

Cardiac Dysrhythmia Detection with GPU-Accelerated Neural Networks

Albert Haque

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Tags: CUDA, Machine learning, Medicine, Neural networks, nVidia, nVidia GeForce GTX 750 Ti, Package

January 8, 2015 by hgpu

Medical imaging using CUDA

Thomas Kovac

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Tags: CUDA, Image registration, Medicine, MRI, nVidia, Thesis

October 25, 2014 by hgpu

Parallelized Seeded Region Growing using CUDA

Seongjin Park, Jeongjin Lee, Hyunna Lee, Juneseuk Shin, Jinwook Seo, Kyoung Ho Lee, Yeong-Gil Shin, Bohyoung Kim

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Tags: Algorithms, Computer science, CUDA, HLSL, Medicine, nVidia, nVidia GeForce GTX 285

September 11, 2014 by hgpu

Fast reconstruction of 3D volumes from 2D CT projection data with GPUs

M. Leeser, S. Mukherjee, J. Brock

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Tags: AMD, AMD Radeon HD 7970, Computed tomography, CT, CUDA, Heterogeneous systems, Medicine, nVidia, OpenCL, Tesla C2075

September 1, 2014 by hgpu

Large Language Model Powered C-to-CUDA Code Translation: A Novel Auto-Parallelization Framework

GigaAPI: a user-space API that simplifies multi-GPU programming, bridging the gap between the capabilities of parallel GPU systems and the ability of developers to harness their full potential

GigaAPI for GPU Parallelization

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

Advances in Semantic Patching for HPC-oriented Refactorings with Coccinelle

DuoReduce: MLIR's benchmark

Hardware-Assisted Software Testing and Debugging for Heterogeneous Computing

Shamrock: Multi-GPU hydrodynamics for astrophysics

The Shamrock code: I- Smoothed Particle Hydrodynamics on GPUs

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

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high performance computing on graphics processing units: hgpu.org

Applications

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

Graphics Supercomputing Applied to Brain Image Analysis with NiftyReg

Parallel Multi-Dimensional LSTM, With Application to Fast Biomedical Volumetric Image Segmentation

Parallelization of DIRA and CTmod using OpenMP and OpenCL

U-Net: Convolutional Networks for Biomedical Image Segmentation

A Study of Scheduling a Neuro-imaging Application On a Heterogeneous CPU-GPU Cluster

Deep convolutional networks for pancreas segmentation in CT imaging

A fast marching method based back projection algorithm for photoacoustic tomography in heterogeneous media

Cardiac Dysrhythmia Detection with GPU-Accelerated Neural Networks

Medical imaging using CUDA

Parallelized Seeded Region Growing using CUDA

Fast reconstruction of 3D volumes from 2D CT projection data with GPUs

Recent source codes

Large Language Model Powered C-to-CUDA Code Translation: A Novel Auto-Parallelization Framework

GigaAPI: a user-space API that simplifies multi-GPU programming, bridging the gap between the capabilities of parallel GPU systems and the ability of developers to harness their full potential

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

DuoReduce: MLIR's benchmark

Shamrock: Multi-GPU hydrodynamics for astrophysics

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

Celerity Runtime: High-level C++ for Accelerator Clusters

wgpy: WebGL accelerated numpy-compatible array library for web browser

Microbenchmarking OpenMP target offload with Catch2

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