high performance computing on graphics processing units: hgpu.org

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GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda

Shuang Wang, Jihoon Kim, Xiaoqian Jiang, Stefan F Brunner, Lucila Ohno-Machado

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, RNA, Smith-Waterman algorithm, Tesla M2090

May 10, 2014 by hgpu

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

Brice Goglin

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Tags: Computer science, CUDA, GPU cluster, Heterogeneous systems, nVidia, OpenMPI, Package, Xeon Phi

May 7, 2014 by hgpu

Improving the Programmability of GPU Architectures

Cedric Nugteren

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Tags: Algorithms, Computer science, CUDA, nVidia, OpenACC, OpenCL, Package, Performance, Thesis

May 7, 2014 by hgpu

Non-separable 2D, 3D and 4D filtering with CUDA

Anders Eklund, Paul Dufort

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Tags: CUDA, FFT, Filtering, Image processing, nVidia, nVidia GeForce GTX 680, Package, Signal denoising

May 5, 2014 by hgpu

Accelerating Mixed-Abstraction SystemC Models on Multi-Core CPUs and GPUs

Anirudh Mohan Kaushik

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Tags: Compilers, Computer science, CUDA, Heterogeneous systems, nVidia, Package, Tesla C2075, Thesis

May 5, 2014 by hgpu

Coalition Structure Generation with the Graphics Processing Unit

Krzysztof Pawlowski, Karol Kurach, Kim Svensson, Sarvapali Ramchurn, Tomasz P. Michalak, Talal Rahwan

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 660, Package, Performance

May 3, 2014 by hgpu

SUPERGLUE: A Shared Memory Framework Using Data Versioning for Dependency-Aware Task-Based Parallelization

Martin Tillenius

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Tags: Algorithms, Computer science, Intel Xeon Phi, OpenMP, Package, Task scheduling

April 29, 2014 by hgpu

Efficient Acceleration of Mutual Information Computation for Nonrigid Registration using CUDA

Kei Ikeda, Fumihiko Ino, Kenichi Hagihara

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Tags: CUDA, Image processing, Image registration, nVidia, nVidia GeForce GTX 580, Package

April 27, 2014 by hgpu

On the Parallelization of Integer Polynomial Multiplication

Farnam Mansouri

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Tags: Algorithms, Computer science, CUDA, nVidia, Package, Symbolic Computation, Tesla C2050, Thesis

April 25, 2014 by hgpu

SWAPHI: Smith-Waterman Protein Database Search on Xeon Phi Coprocessors

Yongchao Liu, Bertil Schmidt

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Tags: Computer science, Intel Xeon Phi, Package, Smith-Waterman algorithm

April 21, 2014 by hgpu

Sparser, Better, Faster GPU Parsing

David Hall, Taylor Berg-Kirkpatrick, John Canny, Dan Klein

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Tags: Computer science, nVidia, nVidia GeForce GTX 680, OpenCL, Package, Performance

April 21, 2014 by hgpu

The Reconstruction Toolkit (RTK), an open-source cone-beam CT reconstruction toolkit based on the Insight Toolkit (ITK)

S. Rit, M. Vila Oliva, S. Brousmiche, R. Labarbe, D. Sarrut, G. C. Sharp

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Tags: Computed tomography, CT, CUDA, Medicine, nVidia, OpenCL, Package, Tesla M2090

April 18, 2014 by hgpu

hpcbench: A set of benchmarking utilities for biomolecular simulation tools

Engineering Supercomputing Platforms for Biomolecular Applications

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

Efficient Graph Embedding at Scale: Optimizing CPU-GPU-SSD Integration

Can Large Language Models Predict Parallel Code Performance?

See all packages

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high performance computing on graphics processing units: hgpu.org

Packages

GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

Improving the Programmability of GPU Architectures

Non-separable 2D, 3D and 4D filtering with CUDA

Accelerating Mixed-Abstraction SystemC Models on Multi-Core CPUs and GPUs

Coalition Structure Generation with the Graphics Processing Unit

SUPERGLUE: A Shared Memory Framework Using Data Versioning for Dependency-Aware Task-Based Parallelization

Efficient Acceleration of Mutual Information Computation for Nonrigid Registration using CUDA

On the Parallelization of Integer Polynomial Multiplication

SWAPHI: Smith-Waterman Protein Database Search on Xeon Phi Coprocessors

Sparser, Better, Faster GPU Parsing

The Reconstruction Toolkit (RTK), an open-source cone-beam CT reconstruction toolkit based on the Insight Toolkit (ITK)

Recent source codes

hpcbench: A set of benchmarking utilities for biomolecular simulation tools

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

chemtrain: Training Molecular Dynamics Potentials in JAX

microSYCL: SYCL micro-benchmarks repository

XaaS containers

CASS: Cuda-Amd aSSembly

Cluser of smartphones for edge computing application using TensorFlow

SYCL Container

Efficient Graph Embedding at Scale: Optimizing CPU-GPU-SSD Integration

Can Large Language Models Predict Parallel Code Performance?

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