high performance computing on graphics processing units: hgpu.org

Applications

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Computer Simulation of Saturn’s Ring Structure

Cole Kendrick

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Tags: Astrophysics, ATI, ATI Radeon HD 5850, Gravitation, MPI, N-body simulation, nVidia, nVidia GeForce GTX 580, OpenCL, Package, Tesla S2050

April 21, 2013 by hgpu

MrBayes tgMC3: A Tight GPU Implementation of MrBayes

Cheng Ling, Tsuyoshi Hamada, Jianing Bai, Xianbin Li, Douglas Chesters, Weimin Zheng, Weifeng Shi

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Tags: Algorithms, Bayesian, Computer science, CUDA, nVidia, nVidia GeForce GTX 480, Package

April 18, 2013 by hgpu

B-Calm: an Open-Source Multi-Gpu-Based 3D-FDTD with Multi-Pole Dispersion for Plasmonics

Pierre Wahl, Dany-Sebastien Ly-Gagnon, Christof Debaes, Jurgen Van Erps, Nathalie Vermeulen, David A. B. Miller, Hugo Thienpont

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Tags: Algorithms, CUDA, Electrodynamics, FDTD, Finite-difference time-domain, nVidia, Package, Tesla C2075

April 13, 2013 by hgpu

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

Yongchao Liu, Adrianto Wirawan, Bertil Schmidt

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 680, nVidia GeForce GTX 690, Package, PTX, Sequence alignment, Smith-Waterman algorithm

April 10, 2013 by hgpu

OpenCL Fast Fourier Transform

Ruobing Li

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Tags: Computer science, FFT, nVidia, OpenCL, Package, Tesla M2070

April 9, 2013 by hgpu

A Performance Comparison of Different Graphics Processing Units Running Direct N-Body Simulations

R. Capuzzo-Dolcettaa, M. Spera

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Tags: Astrophysics, ATI, ATI Radeon HD 6970, ATI Radeon HD 7870, ATI Radeon HD 7970, Gravitation, Instrumentation and Methods for Astrophysics, N-body simulation, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 680, OpenCL, Package, Tesla C1060, Tesla C2050, Tesla K20

April 9, 2013 by hgpu

Atomic-free Irregular Computations on GPUs

Rupesh Nasre, Martin Burtscher, Keshav Pingali

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, Package, Performance, Tesla K20

April 7, 2013 by hgpu

Adapting Particle Filter Algorithms to Many-Core Architectures

Mehdi Chitchian, Alexander S. van Amesfoort, Andrea Simonetto, Tamas Keviczky, Henk J. Sips

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Tags: Algorithms, ATI, ATI Radeon HD 6970, ATI Radeon HD 7970, Bayesian, Computer science, Computer vision, CUDA, Filtering, Monte Carlo simulation, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 680, OpenCL, Package, Particle filtering

April 4, 2013 by hgpu

Optimising Purely Functional GPU Programs

Trevor L. McDonell, Manuel M. T. Chakravarty, Gabriele Keller, Ben Lippmeier

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Tags: Computer science, CUDA, Haskell, nVidia, Package, Performance, Tesla T10

April 4, 2013 by hgpu

C Language Extensions for Hybrid CPU/GPU Programming with StarPU

Ludovic Courtes

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Tags: Computer science, Hybrid computing, Mathematical Software, MPI, OpenCL, Package

April 4, 2013 by hgpu

A journey from single-GPU to optimized multi-GPU SPH with CUDA

E. Rustico, G. Bilotta, G. Gallo, A. Herault, C. Del Negro, R. A. Dalrymple

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Tags: CUDA, Fluid dynamics, nVidia, nVidia GeForce GTX 480, Package

March 31, 2013 by hgpu

CMCpy: Genetic Code-Message Coevolution Models in Python

Peter J. Becich, Brian P. Stark, Harish S. Bhat, David H. Ardell

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 460, Package, Python

March 31, 2013 by hgpu

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Towards Efficient and Practical GPU Multitasking in the Era of LLM

Bandicoot: C++ library for GPU accelerated linear algebra

Bandicoot: A Templated C++ Library for GPU Linear Algebra

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high performance computing on graphics processing units: hgpu.org

Applications

Computer Simulation of Saturn’s Ring Structure

MrBayes tgMC3: A Tight GPU Implementation of MrBayes

B-Calm: an Open-Source Multi-Gpu-Based 3D-FDTD with Multi-Pole Dispersion for Plasmonics

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

OpenCL Fast Fourier Transform

A Performance Comparison of Different Graphics Processing Units Running Direct N-Body Simulations

Atomic-free Irregular Computations on GPUs

Adapting Particle Filter Algorithms to Many-Core Architectures

Optimising Purely Functional GPU Programs

C Language Extensions for Hybrid CPU/GPU Programming with StarPU

A journey from single-GPU to optimized multi-GPU SPH with CUDA

CMCpy: Genetic Code-Message Coevolution Models in Python

Recent source codes

HPC Benchmark Survey

HDM: Home made Diffusion Models

General Matrix Multiplication (GEMM)

CrossTL: Universal Programming Language & Translator

TBD-GPU

DG-SWEM - The Discontinuous Galerkin Shallow Water Equation Model

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Bandicoot: C++ library for GPU accelerated linear algebra

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