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Temporospatial Epidemic Simulations Using Heterogeneous Computing

Dhananjai M. Rao

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Tags: Earth and Space Sciences, HPC, OpenCL, Package

June 9, 2019 by hgpu

A Survey on Evaluating and Optimizing Performance of Intel Xeon Phi

Sparsh Mittal, Osho Anand, Visnu P Kumarr

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Tags: Compilers, Computer science, Intel Xeon Phi, OpenMP, survey

June 9, 2019 by hgpu

PPOpenCL: a performance-portable OpenCL compiler with host and kernel thread code fusion

Ying Liu, Lei Huang, Mingchuan Wu, Huimin Cui, Fang Lv, Xiaobing Feng, Jingling Xue

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Tags: Code generation, Compilers, Computer science, OpenCL

June 9, 2019 by hgpu

Diagnosing Performance Bottlenecks in HPC Applications

Kenneth Czechowski

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Tags: Computer science, HPC, Package, Performance, Thesis

June 9, 2019 by hgpu

LAMDA: Learning-Assisted Multi-Stage Autotuning for FPGA Design Closure

Ecenur Ustun, Shaojie Xiang, Jinny Gui, Cunxi Yu, Zhiru Zhang

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Tags: Computer science, FPGA, OpenCL, Performance

June 9, 2019 by hgpu

ParPaRaw: Massively Parallel Parsing of Delimiter-Separated Raw Data

Elias Stehle, Hans-Arno Jacobsen

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Tags: Computer science, CUDA, Data Structures and Algorithms, Databases, nVidia, nVidia GeForce GTX Titan X

June 5, 2019 by hgpu

Dynamic Distribution Pruning for Efficient Network Architecture Search

Xiawu Zheng, Rongrong Ji, Lang Tang, Yan Wan, Baochang Zhang, Yongjian Wu, Yunsheng Wu, Ling Shao

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Tags: Computer science, Computer vision, CUDA, Deep learning, Machine learning, nVidia, Package, Tesla V100

June 5, 2019 by hgpu

Raising the Performance of the Tinker-HP Molecular Modeling Package on Intel’s HPC Architectures: a Living Review [Article v1.0]

Luc-Henri Jolly, Alejandro Duran, Louis Lagardere, Jay W. Ponder, Pengyu Ren, Jean-Philip Piquemal

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Tags: Chemical Physics, Computational Physics, Computer science, Intel Xeon Phi, Mathematical Software, Molecular dynamics, Molecular modeling, OpenMP, Package

June 5, 2019 by hgpu

Classify QCD phase transition with deep learning

Long-Gang Pang, Kai Zhou, Nan Su, Hannah Petersen, Horst Stoecker, Xin-Nian Wang

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Tags: Deep learning, HEP, Machine learning, Neural networks, OpenCL, Package, Pattern recognition, Phase transition, Physics, QCD

June 2, 2019 by hgpu

The Accelerator Wall: Limits of Chip Specialization

Adi Fuchs, David Wentzlaff

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Tags: ASIC, Computer science, FPGA

June 2, 2019 by hgpu

A Development Platform for Embedded Domain-Specific Languages

Shigeru Chiba, YungYu Zhuang, Thanh-Chung Dao

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Tags: Computer science, CUDA, DSL, High-level Languages, Java, nVidia, Package

June 2, 2019 by hgpu

Heterogeneous Resource-Elastic Scheduling for CPU+FPGA Architectures

Anuj Vaishnav, Khoa Dang Pham, Dirk Koch

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Tags: Computer science, FPGA, Heterogeneous systems, OpenCL

June 2, 2019 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Temporospatial Epidemic Simulations Using Heterogeneous Computing

A Survey on Evaluating and Optimizing Performance of Intel Xeon Phi

PPOpenCL: a performance-portable OpenCL compiler with host and kernel thread code fusion

Diagnosing Performance Bottlenecks in HPC Applications

LAMDA: Learning-Assisted Multi-Stage Autotuning for FPGA Design Closure

ParPaRaw: Massively Parallel Parsing of Delimiter-Separated Raw Data

Dynamic Distribution Pruning for Efficient Network Architecture Search

Raising the Performance of the Tinker-HP Molecular Modeling Package on Intel’s HPC Architectures: a Living Review [Article v1.0]

Classify QCD phase transition with deep learning

The Accelerator Wall: Limits of Chip Specialization

A Development Platform for Embedded Domain-Specific Languages

Heterogeneous Resource-Elastic Scheduling for CPU+FPGA Architectures

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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