high performance computing on graphics processing units: hgpu.org

Packages

hgpu.org » Applications

CAMPAIGN: An open-source Library of GPU-accelerated Data Clustering Algorithms

Kai J. Kohlhoff, Marc H. Sosnick, William T. Hsu, Vijay S. Pande, Russ B. Altman

Source codes

Tags: Bioinformatics, Biology, Clustering, CUDA, nVidia, Package

July 1, 2011 by hgpu

EASEA: specification and execution of evolutionary algorithms on GPGPU

Ogier Maitre, Frederic Kruger, Stephane Querry, Nicolas Lachiche, Pierre Collet

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Source codes

Tags: Computer science, CUDA, Evolutionary Computations, Genetic programming, nVidia, nVidia GeForce GTX 480, Package

July 1, 2011 by hgpu

Voreen: A Rapid-Prototyping Environment for Ray-Casting-Based Volume Visualizations

Jennis Meyer-Spradow, Timo Ropinski, Jorg Mensmann, Klaus Hinrichs

Source codes

Tags: Computer science, GLSL, OpenGL, Package, Rendering, Visualization

June 27, 2011 by hgpu

Practical parallel imaging compressed sensing MRI: Summary of two years of experience in accelerating body MRI of pediatric patients

S.S. Vasanawala, M.J. Murphy, M.T. Alley, P. Lai, K. Keutzer, J.M. Pauly, M. Lustig

Source codes

Tags: CUDA, Image reconstruction, Medicine, MRI, nVidia, Package

June 21, 2011 by hgpu

GPU accelerated rotation-based emission tomography reconstruction

S. Pedemonte, A. Bousse, K. Erlandsson, M. Modat, S. Arridge, B. F. Hutton, S. Ourselin

Source codes

Tags: CUDA, Image reconstruction, Medicine, nVidia, Package, Tomography

June 21, 2011 by hgpu

Protein alignment algorithms with an efficient backtracking routine on multiple GPUs

Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzynka, Erwin Pesch, Pawel Wojciechowski

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Source codes

Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 480, Package, Sequence alignment, Tesla S1070

June 21, 2011 by hgpu

ClearView: An Interactive Context Preserving Hotspot Visualization Technique

Jens Kruger, Jens Schneider, Rudiger Westermann

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Source codes

Tags: 3D Graphics and Realism, ATI, ATI Radeon X1800, Computer science, DirectX, Package, Visualization

June 18, 2011 by hgpu

Coming Soon: Research in a Cloud

Pam Frost Gorder

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Source codes

Tags: Chemistry, Cloud, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package

June 18, 2011 by hgpu

Brownian dynamics simulations on CPU and GPU with BD_BOX

Maciej Dlugosz, Pawel Zielinski, Joanna Trylska

Source codes

Tags: Chemistry, CUDA, Molecular dynamics, MPI, nVidia, OpenMP, Package

June 16, 2011 by hgpu

A sparse octree gravitational N-body code that runs entirely on the GPU processor

Jeroen Bedorf, Evghenii Gaburov, Simon Portegies Zwart

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Source codes

Tags: Astrophysics, CUDA, Gravitation, Instrumentation and Methods for Astrophysics, N-body simulation, nVidia, nVidia GeForce 8800 GTS, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Package, Tesla C1060, Tesla C2050

June 14, 2011 by hgpu

cuGWAM: Genome-wide association multifactor dimensionality reduction using CUDA-enabled high-performance graphics processing unit

Min-Seok Kwon, Kyunga Kim, Sungyoung Lee, Taesung Park

Source codes

Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, Package

June 9, 2011 by hgpu

GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores

Satish Chikkagoudar, Kai Wang, Mingyao Li

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Tags: Biology, CUDA, Genetics, nVidia, nVidia Quadro FX 1800, Package, Tesla C1060

June 7, 2011 by hgpu

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

Faial: finds bugs in CUDA kernels

Sound and Partially-Complete Static Analysis of Data-Races in GPU Programs

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

Intel® SHMEM: Device initiated shared memory based communication library

Intel(R) SHMEM: GPU-initiated OpenSHMEM using SYCL

miniLB: Lattice Botlzmann miniapp w/SYCL

miniLB: A Performance Portability Study of Lattice-Boltzmann Simulations

AFOCL

Bitstream Database-Driven FPGA Programming Flow Based on Standard OpenCL

2domination

HPC acceleration of large (min, +) matrix products to compute domination-type parameters in graphs

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high performance computing on graphics processing units: hgpu.org

Packages

CAMPAIGN: An open-source Library of GPU-accelerated Data Clustering Algorithms

EASEA: specification and execution of evolutionary algorithms on GPGPU

Voreen: A Rapid-Prototyping Environment for Ray-Casting-Based Volume Visualizations

Practical parallel imaging compressed sensing MRI: Summary of two years of experience in accelerating body MRI of pediatric patients

GPU accelerated rotation-based emission tomography reconstruction

Protein alignment algorithms with an efficient backtracking routine on multiple GPUs

ClearView: An Interactive Context Preserving Hotspot Visualization Technique

Brownian dynamics simulations on CPU and GPU with BD_BOX

A sparse octree gravitational N-body code that runs entirely on the GPU processor

cuGWAM: Genome-wide association multifactor dimensionality reduction using CUDA-enabled high-performance graphics processing unit

GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores

Recent source codes

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

EnergyUCB-Bandit

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

Faial: finds bugs in CUDA kernels

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

Intel® SHMEM: Device initiated shared memory based communication library

miniLB: Lattice Botlzmann miniapp w/SYCL

AFOCL

2domination

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