high performance computing on graphics processing units: hgpu.org

Packages

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Obsidian: GPU Kernel Programming in Haskell (thesis)

Joel Svensson

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Tags: Code generation, Compilers, Computer science, CUDA, nVidia, nVidia GeForce GTX 320 M, nVidia GeForce GTX 480, Package, Thesis

March 13, 2011 by hgpu

GBOOST : A GPU-based tool for detecting gene-gene interactions in genome-wide case control studies

Ling Sing S. Yung, Can Yang, Xiang Wan, Weichuan Yu

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Tags: Bioinformatics, Biology, Genetics, nVidia, nVidia GeForce GTX 285, Package

March 12, 2011 by hgpu

Ocelot: a dynamic optimization framework for bulk-synchronous applications in heterogeneous systems

Gregory F. Diamos, Andrew R. Kerr, Sudhakar Yalamanchili, Nathan Clark

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Tags: Compilers, Computer science, CUDA, Heterogeneous systems, nVidia, Package, Programming Languages, PTX

March 9, 2011 by hgpu

Benchmarking GPU and CPU codes for Heisenberg spin glass overrelaxation

M. Bernaschi, G. Parisi, L. Parisi

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Tags: Condensed matter, CUDA, nVidia, nVidia GeForce GTX 480, Package, Physics, Spin Systems, Tesla C1060, Tesla C2050

March 9, 2011 by hgpu

Classical Simulation of Quantum Adiabatic Algorithms using Mathematica on GPUs

Sandra Diaz-Pier, Salvador E. Venegas-Andraca, Jose Luis Gomez-Munoz

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Tags: Computational Physics, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Physics, Quantum Physics, SAT, Symbolic Computation

March 9, 2011 by hgpu

General-purpose molecular dynamics simulations on GPU-based clusters

Christian R. Trott, Lars Winterfeld, Paul S. Crozier

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Tags: Computational Physics, Condensed matter, CUDA, GPU cluster, Materials Science, Molecular dynamics, MPI, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Performance, Physics, Tesla C1060, Tesla S1070

March 8, 2011 by hgpu

Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures

Marc A. Suchard, Quanli Wang, Cliburn Chan, Jacob Frelinger, Andrew Cron, Mike West

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Tags: Bayesian, CUDA, Mathematics, nVidia, nVidia GeForce 9600 M GT, nVidia GeForce GTX 285, Package, Statistics, Tesla C1060

March 4, 2011 by hgpu

FluoroSim: A Visual Problem-Solving Environment for Fluorescence Microscopy

Cory W. Quammen, Alvin C. Richardson, Julian Haase, Benjamin D. Harrison, Russell M. Taylor, Kerry S. Bloom

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Tags: Algorithms, Biology, CUDA, Image generation, Microscopy, nVidia, nVidia GeForce 8800 GTX, OpenGL, Package

March 2, 2011 by hgpu

Integrating GPUs as fast co-processors into the existing parallel FE package FEAST

Dominik Goddeke, Christian Becker, Stefan Turek

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Tags: Finite element method, Fluid dynamics, nVidia, nVidia Quadro FX 1400, Package, Partial differential equations, PDEs

March 2, 2011 by hgpu

Hardware-Oriented Multigrid Finite Element Solvers on GPU-Accelerated Clusters

Stefan Turek, Dominik Goddeke, Sven H.M. Buijssen, Hilmar Wobker

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Tags: CUDA, Finite element method, Fluid dynamics, nVidia, nVidia GeForce GTX 280, Package

March 2, 2011 by hgpu

FEAST – Realisation of hardware-oriented Numerics for HPC simulations with Finite Elements

Stefan Turek, Dominik Goddeke, Christian Becker, Sven H.M. Buijssen, Hilmar Wobker

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Tags: CUDA, Finite element method, Fluid dynamics, nVidia, nVidia GeForce GTX 280, Package

March 1, 2011 by hgpu

Efficient Finite Element Geometric Multigrid Solvers for Unstructured Grids on GPUs

Markus Geveler, Dirk Ribbrock, Dominik Goddeke, Peter Zajac, Stefan Turek

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Tags: Cell processor, CUDA, Finite element method, Fluid dynamics, GPU cluster, MPI, nVidia, nVidia GeForce GTX 285, Package

March 1, 2011 by hgpu

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Towards Efficient and Practical GPU Multitasking in the Era of LLM

Bandicoot: C++ library for GPU accelerated linear algebra

Bandicoot: A Templated C++ Library for GPU Linear Algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

The Fused Kernel Library: A C++ API to Develop Highly-Efficient GPU Libraries

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

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high performance computing on graphics processing units: hgpu.org

Packages

Obsidian: GPU Kernel Programming in Haskell (thesis)

GBOOST : A GPU-based tool for detecting gene-gene interactions in genome-wide case control studies

Ocelot: a dynamic optimization framework for bulk-synchronous applications in heterogeneous systems

Benchmarking GPU and CPU codes for Heisenberg spin glass overrelaxation

Classical Simulation of Quantum Adiabatic Algorithms using Mathematica on GPUs

General-purpose molecular dynamics simulations on GPU-based clusters

Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures

FluoroSim: A Visual Problem-Solving Environment for Fluorescence Microscopy

Integrating GPUs as fast co-processors into the existing parallel FE package FEAST

Hardware-Oriented Multigrid Finite Element Solvers on GPU-Accelerated Clusters

FEAST – Realisation of hardware-oriented Numerics for HPC simulations with Finite Elements

Efficient Finite Element Geometric Multigrid Solvers for Unstructured Grids on GPUs

Recent source codes

CrossTL: Universal Programming Language & Translator

TBD-GPU

DG-SWEM - The Discontinuous Galerkin Shallow Water Equation Model

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Bandicoot: C++ library for GPU accelerated linear algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

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