high performance computing on graphics processing units: hgpu.org

Applications

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THOR: A New and Flexible Global Circulation Model to Explore Planetary Atmospheres

Joao M. Mendonca, Simon L. Grimm, Luc Grosheintz, Kevin Heng

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Tags: Astrophysics, CUDA, Earth and Planetary Astrophysics, Earth and Space Sciences, nVidia, Tesla K20

July 20, 2016 by hgpu

Scientific Computing Using Consumer Video-Gaming Hardware Devices

Glenn Volkema, Gaurav Khanna

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Tags: AMD Radeon R9 Fury X, ATI, Benchmarking, Computer science, nVidia, nVidia Tegra TX1, OpenCL, Package, Performance, Tesla K40

July 20, 2016 by hgpu

Runtime Configurable Deep Neural Networks for Energy-Accuracy Trade-off

Hokchhay Tann, Soheil Hashemi, R. Iris Bahar, Sherief Reda

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Tags: Algorithms, ARM, ASIC, Computer science, CUDA, Deep learning, Neural networks, nVidia, nVidia Tegra TX1

July 20, 2016 by hgpu

Accelerating the Conjugate Gradient Algorithm with GPUs in CFD Simulations

Hartwig Anzt, Marc Baboulin, Jack Dongarra, Yvan Fournier, Frank Hulsemann, Amal Khabou, Yushan Wang

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Tags: cfd, Conjugate gradient solver, CUDA, Fluid dynamics, nVidia, OpenCL, Tesla K40

July 18, 2016 by hgpu

HPC on the Intel Xeon Phi: Homomorphic Word Searching

Paulo Martins, Leonel Sousa

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Tags: Computer science, Intel Xeon Phi, Security

July 18, 2016 by hgpu

IODA: an Input/Output Deep Architecture for image labeling

J. Lerouge, R. Herault, Clement Chatelain, F. Jardin, R. Modzelewski

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Tags: Computer science, CUDA, Deep learning, Neural networks, nVidia, Package, Python, Tesla C1060, Theano

July 18, 2016 by hgpu

A Kinetic Vlasov Model for Plasma Simulation Using Discontinuous Galerkin Method on Many-Core Architectures

Noah Reddell

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Tags: OpenCL, Physics, Plasma physics, Thesis

July 18, 2016 by hgpu

Heterogeneous Computing for Data Stream Mining

Vladimir Petko

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Tags: Algorithms, Computer science, Data mining, Heterogeneous systems, Machine learning, Nearest neighbour, nVidia, OpenCL, Tesla C2050, Thesis

July 18, 2016 by hgpu

Stability and Performance of Various Singular Value QR Implementations on Multicore CPU with a GPU

Ichitaro Yamazaki, Stanimire Tomov, Jack Dongarra

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Tags: BLAS, Computer science, CUDA, Linear Algebra, Matrix decomposition, Mixed precision, Numerical Analysis, nVidia, Performance, Tesla K20

July 16, 2016 by hgpu

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

Ye Fang, Yun Ding, Wei P. Feinstein, David M. Koppelman, Juana Moreno, Mark Jarrell, J. Ramanujam, Michal Brylinski

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Tags: Algorithms, Chemistry, CUDA, Heterogeneous systems, Intel Xeon Phi, Medicine, Molecular dynamics, nVidia, nVidia GeForce GTX 980, OpenMP, Package

July 16, 2016 by hgpu

An investigation of GPU-based stiff chemical kinetics integration methods

Nicholas J. Curtis, Kyle E. Niemeyer, Chih-Jen Sung

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Tags: Algorithms, Chemistry, Computational Physics, CUDA, nVidia, Physics, Tesla C2075

July 16, 2016 by hgpu

Finite Element Integration with Quadrature on the GPU

Matthew G. Knepley, Karl Rupp, Andy R. Terrel

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Tags: AMD FirePro W9100, ATI, Computer science, Differential equations, Mathematical Software, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 750 Ti, OpenCL, Partial differential equations, PDEs, Tesla K20

July 16, 2016 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

THOR: A New and Flexible Global Circulation Model to Explore Planetary Atmospheres

Scientific Computing Using Consumer Video-Gaming Hardware Devices

Runtime Configurable Deep Neural Networks for Energy-Accuracy Trade-off

Accelerating the Conjugate Gradient Algorithm with GPUs in CFD Simulations

HPC on the Intel Xeon Phi: Homomorphic Word Searching

IODA: an Input/Output Deep Architecture for image labeling

A Kinetic Vlasov Model for Plasma Simulation Using Discontinuous Galerkin Method on Many-Core Architectures

Heterogeneous Computing for Data Stream Mining

Stability and Performance of Various Singular Value QR Implementations on Multicore CPU with a GPU

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

An investigation of GPU-based stiff chemical kinetics integration methods

Finite Element Integration with Quadrature on the GPU

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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