high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Comprehensive Performance Monitoring for GPU Cluster Systems

K. Furlinger, N.J. Wright, D. Skinner

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Tags: Benchmarking, Computer science, CUDA, GPU cluster, MPI, nVidia, Performance, Tesla C2050

November 13, 2011 by hgpu

Advantages and GPU implementation of high-performance indexed DNA search based on suffix arrays

Gustavo Encarnacao, Nuno Sebastiao, Nuno Roma

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 580, Suffix trees

November 13, 2011 by hgpu

Fast Level Set Segmentation of Biomedical Images using Graphics Processing Units

Hormuz Mostofi

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Tags: Algorithms, Computer vision, CUDA, Image processing, Medicine, nVidia, nVidia GeForce 8600 M GT, Package

November 13, 2011 by hgpu

Efficient GPU Implementation for Particle in Cell Algorithm

Rejith George Joseph, Girish Ravunnikutty, Sanjay Ranka, Eduardo D'Azevedo, Scott Klasky

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Tags: Algorithms, CUDA, Electrodynamics, nVidia, Package, Particle-in-cell methods, Physics, Plasma physics, Tesla T10

November 13, 2011 by hgpu

Molecular Docking on FPGA and GPU Platforms

I. Pechan, B. Feher

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Tags: Algorithms, Bioinformatics, Biology, CUDA, FPGA, nVidia, nVidia GeForce GT 220, nVidia GeForce GTX 260

November 13, 2011 by hgpu

Efficiently Computing Tensor Eigenvalues on a GPU

Grey Ballard, Tamara Kolda, Todd Plantenga

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Tags: Algorithms, CUDA, Mathematics, nVidia, Tesla C2050

November 12, 2011 by hgpu

rCUDA: Reducing the number of GPU-based accelerators in high performance clusters

J. Duato, Pena, A.J. a, F. Silla, R. Mayo, E.S. Quintana-Orti

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Tags: Computer science, CUDA, Distributed computing, Energy-efficient computing, nVidia, Package, PC cluster, Tesla C1060

November 12, 2011 by hgpu

A Run-Time Adaptive FPGA Architecture for Monte Carlo Simulations

Xiang Tian, C. Bouganis

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Tags: Computer science, FPGA, Monte Carlo simulation

November 12, 2011 by hgpu

Evaluation of an accelerator architecture for Speckle Reducing Anisotropic Diffusion

Siddharth Nilakantan, Srikanth Annangi, Nikhil Gulati, Karthik Sangaiah, Mark Hempstead

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Tags: Algorithms, Computer science, CUDA, Embedded high-performance computing, nVidia, nVidia GeForce 8800 GTX, OpenMP, Performance, Ultrasound

November 12, 2011 by hgpu

A multi-GPU acceleration for 3D imaging of the prostate

E. A. Attardo, A. Borsic, R. J. Halter

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Tags: CUDA, Medicine, nVidia, Tesla S1070, Tomography, Ultrasound

November 12, 2011 by hgpu

Sustainable GPU Computing at Scale

Justin Y. Shi, Moussa Taifi, Abdallah Khreishah, Jie Wu

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Tags: Computer science, CUBLAS, CUDA, Energy-efficient computing, Fault tolerance, nVidia, OpenMPI, Tesla S1070

November 12, 2011 by hgpu

Exploiting Heterogeneity for Energy Efficiency in Chip Multiprocessors

V. Saripalli, G. Sun, A. Mishra, Y. Xie, S. Datta, V. Narayanan

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Tags: Computer science, Energy-efficient computing, Heterogeneous systems

November 12, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

Comprehensive Performance Monitoring for GPU Cluster Systems

Advantages and GPU implementation of high-performance indexed DNA search based on suffix arrays

Fast Level Set Segmentation of Biomedical Images using Graphics Processing Units

Efficient GPU Implementation for Particle in Cell Algorithm

Molecular Docking on FPGA and GPU Platforms

Efficiently Computing Tensor Eigenvalues on a GPU

rCUDA: Reducing the number of GPU-based accelerators in high performance clusters

A Run-Time Adaptive FPGA Architecture for Monte Carlo Simulations

Evaluation of an accelerator architecture for Speckle Reducing Anisotropic Diffusion

A multi-GPU acceleration for 3D imaging of the prostate

Sustainable GPU Computing at Scale

Exploiting Heterogeneity for Energy Efficiency in Chip Multiprocessors

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

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