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Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

You Li, Hao Chi, Leihao Xia, Xiaowen Chu

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Tags: Bioinformatics, Biology, CUDA, GPU cluster, nVidia, nVidia GeForce GTX 580, Spectrometry

May 12, 2014 by hgpu

Dynamic Orchestration of Massively Data Parallel Execution

Mehrzad Samadi

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 560, OpenCL, Performance, Tesla C2050, Thesis

May 10, 2014 by hgpu

Fine-grain Task Aggregation and Coordination on GPUs

Marc S. Orr, Bradford M. Beckmann, Steven K. Reinhardt, David A. Wood

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Tags: Computer science, GPGPU-sim, Hardware Architecture, OpenCL, Performance

May 10, 2014 by hgpu

A Study of the Parallelization of Hybrid SAT Solver using CUDA

Taeill Yoo, Sangpil Kim, Yongjin Yeom, Jusung Kang

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 660, SAT, Security

May 10, 2014 by hgpu

GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda

Shuang Wang, Jihoon Kim, Xiaoqian Jiang, Stefan F Brunner, Lucila Ohno-Machado

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, RNA, Smith-Waterman algorithm, Tesla M2090

May 10, 2014 by hgpu

3D Objects Tracking by GPGPU-Enhanced Particle Filter Algorithms

Jieyun Zhou, Masayuki Numao, Xiaofeng Li, Haitao Chen

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Tags: Algorithms, Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 9300 M, nVidia GeForce GTX 480, OpenCV, Particle filtering

May 10, 2014 by hgpu

Automatic Scheduling of Compute Kernels Across Heterogeneous Architectures

Robert F. Lyerly

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Tags: Compilers, Computer science, Heterogeneous systems, Intel Xeon Phi, Machine learning, nVidia, OpenCL, OpenMP, Task scheduling, Tesla C2075

May 9, 2014 by hgpu

Applying Source Level Auto-Vectorization to Aparapi Java

Frank Curtis Albert

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Tags: Computer science, CUDA, Java, nVidia, nVidia GeForce GTX Titan, OpenCL, Thesis

May 9, 2014 by hgpu

Acceleration of LSB Algorithm in GPU

Darshan R, Prabu R, Divya M

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Tags: Algorithms, Computer science, CUDA, nVidia

May 9, 2014 by hgpu

GPU Implementation of Parallel Support Vector Machine Algorithm with Applications to Detection Intruder

Xueqin Zhang, Yifeng Zhang, Chunhua Gu

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTS 250, Security

May 9, 2014 by hgpu

Understanding Protein Dynamics with L1-Regularized Reversible Hidden Markov Models

Robert T. McGibbon, Bharath Ramsundar, Mohammad M. Sultan, Gert Kiss, Vijay S. Pande

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Tags: Algorithms, Biology, Biophysics, CUDA, Distributed computing, Machine learning, Molecular dynamics, nVidia, nVidia GeForce GTX Titan

May 9, 2014 by hgpu

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

Brice Goglin

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Tags: Computer science, CUDA, GPU cluster, Heterogeneous systems, nVidia, OpenMPI, Package, Xeon Phi

May 7, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Programming

Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

Dynamic Orchestration of Massively Data Parallel Execution

Fine-grain Task Aggregation and Coordination on GPUs

A Study of the Parallelization of Hybrid SAT Solver using CUDA

GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda

3D Objects Tracking by GPGPU-Enhanced Particle Filter Algorithms

Automatic Scheduling of Compute Kernels Across Heterogeneous Architectures

Applying Source Level Auto-Vectorization to Aparapi Java

Acceleration of LSB Algorithm in GPU

GPU Implementation of Parallel Support Vector Machine Algorithm with Applications to Detection Intruder

Understanding Protein Dynamics with L1-Regularized Reversible Hidden Markov Models

Managing the Topology of Heterogeneous Cluster Nodes with Hardware Locality (hwloc)

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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