high performance computing on graphics processing units: hgpu.org

Mark S. Friedrichs, Peter Eastman, Vishal Vaidyanathan, Mike Houston, Scott Legrand, Adam L. Beberg, Daniel L. Ensign, Christopher M. Bruns, Vijay S. Pande

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Tags: ATI, ATI Radeon HD 4870, ATI Stream, Biology, Brook, Chemistry, Computational chemistry, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package, Solvent effects

October 30, 2010 by hgpu

Solving quadratic assignment problems by genetic algorithms with GPU computation: a case study

Shigeyoshi Tsutsui, Noriyuki Fujimoto

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Tags: Algorithms, Artificial intelligence, Computer science, CUDA, nVidia, nVidia GeForce GTX 285, Programming techniques

October 30, 2010 by hgpu

CuPBoP-AMD: Extending CUDA to AMD Platforms

CuPBoP: Making CUDA a Portable Language

Adopter: Automated Deep Learning Optimization via DSL-based Source Code Transformation

Automated Deep Learning Optimization via DSL-Based Source Code Transformation

ROCm's implementation of Gromacs

GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

Experiences with implementing Kokkos’ SYCL backend

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

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high performance computing on graphics processing units: hgpu.org

Programming

High-throughput sequence alignment using Graphics Processing Units

Graphics Processing Units and High-Dimensional Optimization

Quantum Chemistry on Graphical Processing Units. 1. Strategies for Two-Electron Integral Evaluation

A Memory Model for Scientific Algorithms on Graphics Processors

Optimizing data intensive GPGPU computations for DNA sequence alignment

Accelerating molecular modeling applications with graphics processors

Mars: a MapReduce framework on graphics processors

Exploiting graphics processing units for computational biology and bioinformatics

High performance direct gravitational N-body simulations on graphics processing units II: An implementation in CUDA

A performance study of general-purpose applications on graphics processors using CUDA

Accelerating molecular dynamic simulation on graphics processing units

Solving quadratic assignment problems by genetic algorithms with GPU computation: a case study

Recent source codes

CuPBoP-AMD: Extending CUDA to AMD Platforms

Adopter: Automated Deep Learning Optimization via DSL-based Source Code Transformation

ROCm's implementation of Gromacs

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

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